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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b24
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    30   0.56 
At4g29280.1 68417.m04186 expressed protein ; expression supporte...    29   1.3  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    29   1.7  
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta...    28   3.0  
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    27   5.2  
At3g10100.1 68416.m01210 filament protein-related similar to YEA...    27   5.2  
At2g09910.1 68415.m01029 hypothetical protein                          27   5.2  
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro...    27   6.9  
At4g20730.1 68417.m03013 filament protein-related similar to Cyt...    27   6.9  
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    27   6.9  
At1g22260.1 68414.m02782 expressed protein                             27   6.9  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    27   6.9  
At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family...    26   9.1  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    26   9.1  
At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containi...    26   9.1  
At2g07680.1 68415.m00992 ABC transporter family protein                26   9.1  
At1g67290.1 68414.m07658 glyoxal oxidase-related contains simila...    26   9.1  

>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -3

Query: 418 FLNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRA 296
           +L+   ++L+ S    LF    LSLK  +HDFV V++ T++
Sbjct: 15  YLHQAPLFLKTSQS--LFPRPSLSLKPMKHDFVCVKATTKS 53


>At4g29280.1 68417.m04186 expressed protein ; expression supported
           by MPSS
          Length = 77

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 180 CMCEVYPGGVCNPSFCVCV*YRLKNGAG 97
           C   ++PG  C+PS CV   Y   NG G
Sbjct: 31  CTIIIHPGSPCDPSDCVQYCYAEYNGVG 58


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 267 TVGCVECLAVNSSVFCNFGGLSMNGSWIFC 178
           T+ C  C  + ++V C+ GG S NGS ++C
Sbjct: 784 TITC-SCGRITATVPCDAGGRSANGSNVYC 812


>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 738

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 94  HAGAVLQPVSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINS 243
           HAG  L PV+ A+++AR   A ++D    E   A     A+ T+   + S
Sbjct: 229 HAGEYLDPVAVAESKARRRRAKKMDSIEDEKAKASEGGKAKNTQQTDVGS 278


>At4g15200.1 68417.m02329 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 600

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 385 SNKNKLFELSGLSLKSCRHDFVTVESQTRAG 293
           S+K + F LS +SLK   H+F T ES + AG
Sbjct: 223 SSKKRSF-LSRVSLKRNGHEFSTAESSSAAG 252


>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
           NUF1 protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; similar to
           Myosin heavy chain, smooth muscle isoform (SMMHC)
           (SP:P35749) {Homo sapiens}
          Length = 1004

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  SFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
           ++F +CH+WF  P+   S  + +       TP
Sbjct: 168 AYFRQCHLWFPIPSLIISFLNRRRMAFSQLTP 199


>At2g09910.1 68415.m01029 hypothetical protein
          Length = 985

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  SFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
           ++F +CH+WF  P+   S  + +       TP
Sbjct: 169 AYFRQCHLWFPIPSLIISFLNRRRMAFSQLTP 200


>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
           protein similar to meiotic asynaptic mutant 1
           [Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
           oleracea var. alboglabra] GI:23506946; contains Pfam
           profile PF02301: HORMA domain
          Length = 1399

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 62  SFFNRCHIWFDTPA---PFFSRYHTQTQKL 142
           ++F +CH+WF  P+    F +R H    +L
Sbjct: 760 AYFRQCHLWFPIPSLIISFLNRRHMAFSQL 789


>At4g20730.1 68417.m03013 filament protein-related similar to
           Cytadherence high molecular weight protein 2 (SP:P47460)
              [Mycoplasma genitalium]; similar to YEAST NUF1
           protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; also
           SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
           muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
           filament protein SP|P12882|MYH1_HUMAN Myosin heavy
           chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
           cell intermediate filament protein
          Length = 800

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 62  SFFNRCHIWFDTPA---PFFSRYHTQTQKL 142
           ++F +CH+WF  P+    F +R H    +L
Sbjct: 169 AYFRQCHLWFPIPSLIISFLNRRHMAFSQL 198


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 11  TTAT*ITQFKHGLSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
           TT T  T      SS SS   R    + +P+P  SR  T +    ++TP
Sbjct: 55  TTTTTTTTTSSSSSSSSSAILRTSKRYPSPSPLLSRSTTNSASNSIKTP 103


>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 415 LNDKVIYLQNSNKNKLFELSGL 350
           LN+K++ LQN  ++ + +LSGL
Sbjct: 364 LNEKIVELQNDKESLISQLSGL 385


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 194 PFIDKPPKLQNTLLLTARHSTHPTV 268
           P +DKP  ++ + LLT+RH  H  V
Sbjct: 704 PVVDKPAPVRISSLLTSRHLLHRRV 728


>At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family
           protein Common family member At4g25620 [Arabidopsis
           thaliana]
          Length = 438

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHST 256
           TP P FS + T+        PP  + HI     P +     L ++L LT R ST
Sbjct: 142 TP-PVFSAFITEPSTAPYTPPPESSVHITTPSSPEVPFAQLLTSSLELTRRDST 194


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 271 EGTKRFRRLPSFGFRLLQNRVCKILN 348
           E   RF  LP++GFR LQ+ + +  N
Sbjct: 882 EAKVRFTLLPTWGFRELQHEIARRFN 907


>At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 822

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -1

Query: 306 KRGQATKSLRSFATVGCVECLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGVCNPS 139
           K  +A K   S    GCV      ++V    G  S +   I  +C++   G C+P+
Sbjct: 401 KEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG-CSPN 455


>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 302  EGRRRNRFVPSLLSDVWNVWLLIVACSVTSA 210
            +G  R+   P  LS+ W +W ++  C V +A
Sbjct: 1046 QGSLRDNLDPLGLSEDWRIWEILDKCKVKAA 1076


>At1g67290.1 68414.m07658 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 615

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 261 GCVECLAVNSSVFCNFGGLSMNGSWI 184
           G ++ LA+ +  +C+ GGL++NG+ +
Sbjct: 166 GDIKPLALTTDTWCSSGGLTVNGTLV 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,260,661
Number of Sequences: 28952
Number of extensions: 161036
Number of successful extensions: 403
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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