Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10d17
(429 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 29 1.8
At5g44780.1 68418.m05488 expressed protein low similarity to SP|... 28 2.3
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 2.3
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL... 28 2.3
At1g76010.1 68414.m08825 expressed protein 28 2.3
At1g72110.1 68414.m08335 expressed protein 28 2.3
At1g07310.1 68414.m00778 C2 domain-containing protein contains s... 28 3.1
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 27 4.1
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ... 27 5.4
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 5.4
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 27 5.4
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,... 27 7.1
At5g55540.1 68418.m06919 expressed protein 27 7.1
At3g27410.1 68416.m03426 expressed protein 27 7.1
At2g33520.1 68415.m04109 expressed protein 27 7.1
At2g32235.1 68415.m03939 expressed protein 27 7.1
At2g16270.1 68415.m01863 expressed protein and genefinder; expr... 27 7.1
At2g05540.1 68415.m00586 glycine-rich protein 27 7.1
At4g34440.1 68417.m04894 protein kinase family protein contains ... 26 9.4
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 26 9.4
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 26 9.4
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 166 PYIVN--PPKDYNPNGNG-YEPIDNGAYYVDPPQGRPYFKPTPFP 291
PY+ N PP Y+P+ Y+ Y PP PY+ PTP P
Sbjct: 612 PYVYNSPPPPYYSPSPKPTYKSPPPPYVYSSPPP--PYYSPTPKP 654
>At5g44780.1 68418.m05488 expressed protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 723
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 190 DYNP-NGNGYEPIDNGAYYVDPPQGR 264
+Y+P NG Y P G +Y PPQG+
Sbjct: 530 NYSPQNGGHYGPAQFGQWYPGPPQGQ 555
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 124 NADSGNGYEPIDNRP-YIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 285
NA G P+ + P + + PP ++ G P+ G Y PPQ P TP
Sbjct: 257 NAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGGFPYGAPPQQLPSAPGTP 311
>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
(PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
(EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
{Arabidopsis thaliana}; contains Pfam profiles: PF00614
phospholipase D.active site motif, PF00168 C2 domain
Length = 1083
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 190 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 291
DY P+ Y+P N Y PP Y +P +P
Sbjct: 101 DYQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYP 134
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 28.3 bits (60), Expect = 2.3
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 130 DSGNGYE-PIDNRPYIVNPPKDYNPNGNG-YE-PIDNGAYYVDPPQG-RPYFKPTPFPGA 297
D G GY+ P ++R Y D P G G Y+ P G Y D PQG R Y P P
Sbjct: 220 DGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRGGY--DGPQGRRGYDGP---PQG 274
Query: 298 RGG 306
RGG
Sbjct: 275 RGG 277
>At1g72110.1 68414.m08335 expressed protein
Length = 479
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 379 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 284
N+ I++ I NTL + FS I T H EH+GK
Sbjct: 41 NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73
>At1g07310.1 68414.m00778 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 352
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 181 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 291
PP + P +P+D Y PQG Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 181 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 303
PP+ Y P +GY P A Y PP P P +PG G
Sbjct: 44 PPQGYPPPPHGYPP----AAYPPPPGAYP---PAGYPGPSG 77
>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 286
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +1
Query: 184 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFK----PTPFPGARGG 306
P+ Y P G GY+P N YY G P + P +P GG
Sbjct: 154 PEPYPPQGGGYQP-QNQNYYPYMNSGSPKTESIGHPETYPPQGGG 197
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 178 NPPKDYN---PNGNGYEPIDNGAYYVDPPQGRP--YFKPTPFPGARG 303
+PP +Y P G P ++ Y P P Y++ TP P RG
Sbjct: 766 SPPPEYQSPPPKGCNDSPSNDHHYQTPTPPSLPPPYYEDTPLPPIRG 812
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 181 PPKDYNPNGN--GYEPIDNGAYYVDPPQGRPYFKP 279
PP Y G GY P G Y PPQG PY P
Sbjct: 217 PPGAYPQQGGYPGYPPQQQGGYPGYPPQG-PYGYP 250
>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 724
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 130 DSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 270
D+ NGY D +P +N PK + N G+ GA P + Y
Sbjct: 231 DTCNGYYCEDFKPNSINKPKMWTENWTGWYTDFGGAVPYRPVEDIAY 277
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 145 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG 261
Y + N + P D NP + + P+ N VDP G
Sbjct: 1086 YHDLHNLAQELQVPTDENPEADNHVPVTNELEKVDPSFG 1124
>At3g27410.1 68416.m03426 expressed protein
Length = 132
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 55 FFMIFVLALLAMANAQDPVKVVENADSGNGYEPIDNRPYIVNPPK 189
FF++F+ +L +AN ++ + DN+P + N K
Sbjct: 5 FFLVFIFVILTVANGISAADSEKSQSPSSSKTLADNKPTVDNSTK 49
>At2g33520.1 68415.m04109 expressed protein
Length = 97
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 163 RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 270
+P I PP Y P Y+ G PP RPY
Sbjct: 21 QPIIEAPPPPYPPTRTRYQDYYGGYGQPHPPPLRPY 56
>At2g32235.1 68415.m03939 expressed protein
Length = 310
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 106 PVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGR-PYFK 276
PVK + +S G EP + +I P ++ +PN GY I +P Q R P +K
Sbjct: 74 PVKR-PSPESKQGDEPRRKKLFIPRPEEEEDPNLMGYSKIPLPVVEFNPTQIRSPLYK 130
>At2g16270.1 68415.m01863 expressed protein and genefinder;
expression supported by MPSS
Length = 759
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +2
Query: 128 LTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAVG 307
L T + L+ ++ +PK T A NL WTL ++ L L L G
Sbjct: 325 LVSATFSPLMKSSFNEFHIPKEITEFAKANNLDQLSDKLWTLTESSLVYMDKLISRLGRG 384
Query: 308 SKEY 319
++EY
Sbjct: 385 NEEY 388
>At2g05540.1 68415.m00586 glycine-rich protein
Length = 135
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +1
Query: 94 NAQDPVKVVENADS--GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNG 234
N +D VK E G GY Y NP Y G GY D G
Sbjct: 36 NERDEVKQTEQFGGFPGGGYGGFPGGGYGGNPGGGYGNRGGGYRNRDGG 84
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 175 VNPPKDYNPNGNGYEPIDNGAYYVDPPQ 258
VN YN N G P NG YY PQ
Sbjct: 222 VNHMHYYNNNPYGGAPSGNGGYYKGTPQ 249
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 145 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGAR 300
+EP + P I NP NPN + +++P K TPFP AR
Sbjct: 86 FEPHHHTP-IANP----NPNFSSSSSSSTTTAHLEPSLTNQRSKTTPFPSAR 132
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 160 NRPYIVNPPKDYNPNGNGYEPIDNG 234
N P I +P K+ P N +PI+NG
Sbjct: 95 NYPIIADPNKEIIPQLNMIDPIENG 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,939,265
Number of Sequences: 28952
Number of extensions: 203749
Number of successful extensions: 620
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -