Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d16
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   245   2e-65
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   244   4e-65
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   5.4  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   5.4  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  245 bits (600), Expect = 2e-65
 Identities = 116/217 (53%), Positives = 150/217 (69%)
 Frame = +2

Query: 65  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 244
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 245 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 424
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG                  
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 425 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 604
                   +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 121 GNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 179

Query: 605 PGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDED 715
            G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +
Sbjct: 180 AGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPE 216


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  244 bits (598), Expect = 4e-65
 Identities = 116/217 (53%), Positives = 150/217 (69%)
 Frame = +2

Query: 65  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 244
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 245 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 424
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG                  
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 425 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 604
                   +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 121 GNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 179

Query: 605 PGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDED 715
            G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +
Sbjct: 180 AGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPE 216


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 83  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 256
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 83  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 256
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,800,230
Number of Sequences: 28952
Number of extensions: 327865
Number of successful extensions: 841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)