Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10d11
(628 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75950.1 68414.m08821 E3 ubiquitin ligase SCF complex subunit... 141 3e-34
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit... 141 4e-34
At1g20140.1 68414.m02519 E3 ubiquitin ligase SCF complex subunit... 125 2e-29
At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit... 124 6e-29
At4g34470.1 68417.m04901 E3 ubiquitin ligase SCF complex subunit... 122 3e-28
At2g25700.1 68415.m03080 E3 ubiquitin ligase SCF complex subunit... 118 3e-27
At3g25650.1 68416.m03192 Skp1 family protein similar toSkp1 [Med... 111 4e-25
At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit... 111 5e-25
At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit... 107 5e-24
At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit... 102 2e-22
At3g21860.1 68416.m02755 E3 ubiquitin ligase SCF complex subunit... 100 7e-22
At3g60010.1 68416.m06700 E3 ubiquitin ligase SCF complex subunit... 99 1e-21
At2g03170.1 68415.m00270 E3 ubiquitin ligase SCF complex subunit... 100 2e-21
At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit... 92 3e-19
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit... 91 7e-19
At3g21830.1 68416.m02752 E3 ubiquitin ligase SCF complex subunit... 83 1e-16
At2g20160.1 68415.m02357 E3 ubiquitin ligase SCF complex subunit... 69 2e-12
At2g45950.1 68415.m05713 SKP1 family protein similar to glycopro... 67 1e-11
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S... 66 2e-11
At3g21840.1 68416.m02753 E3 ubiquitin ligase SCF complex subunit... 63 1e-10
At3g53060.1 68416.m05848 E3 ubiquitin ligase SCF complex subunit... 57 8e-09
At3g28760.1 68416.m03590 expressed protein contains Pfam PF01959... 29 3.3
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 28 5.8
At4g11000.1 68417.m01789 ankyrin repeat family protein contains ... 28 5.8
At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH) domain... 28 5.8
At1g05000.1 68414.m00501 tyrosine specific protein phosphatase f... 28 5.8
At1g55850.1 68414.m06405 cellulose synthase family protein simil... 27 7.7
>At1g75950.1 68414.m08821 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At1) E3 ubiquitin ligase; skp1a; identical to
Skp1a GI:3068807, Skp1p GI:1432083 and UIP1 GI:3719209
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and PF03931:
Skp1 family, tetramerisation domain;
Length = 160
Score = 141 bits (342), Expect = 3e-34
Identities = 79/146 (54%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L+SSD E F V+ +A S TI PLPNV S IL KVI++
Sbjct: 6 IVLKSSDGESFEVEEAVALESQTIA----HMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61
Query: 374 HKDDPPLP-EDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 550
H + E E DD+ +WDADF+K+DQ TLFELILAANYL+IK LLD+TC+TV
Sbjct: 62 HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121
Query: 551 ANMIKGKTPEEIRKTFNIKNDFTAAE 628
A+MIKGKTPEEIR TFNIKNDFT E
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEE 147
>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and
PF03931:Skp1 family, tetramerisation domain; identical
to cDNA UFO binding protein UIP2 mRNA, partial cds
GI:3719210
Length = 171
Score = 141 bits (341), Expect = 4e-34
Identities = 80/156 (51%), Positives = 98/156 (62%), Gaps = 11/156 (7%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L+SSD E F +D +A S TIK PLPNV S IL KVI++
Sbjct: 7 ITLKSSDGENFEIDEAVALESQTIK----HMIEDDCTDNGIPLPNVTSKILSKVIEYCKR 62
Query: 374 HKDDPPLPEDDENKEKRT-----------DDISSWDADFLKVDQGTLFELILAANYLDIK 520
H + E + T +D+ +WD++F+KVDQGTLF+LILAANYL+IK
Sbjct: 63 HVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIK 122
Query: 521 GLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAE 628
GLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT E
Sbjct: 123 GLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEE 158
>At1g20140.1 68414.m02519 E3 ubiquitin ligase SCF complex subunit,
putative similar to Skp1 GI:4959710 from [Medicago
sativa]
Length = 163
Score = 125 bits (302), Expect = 2e-29
Identities = 68/147 (46%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L+SSD E F ++ +A S TIK PLPNV AIL KVI++
Sbjct: 8 IILKSSDGESFEIEEAVAVKSQTIK----HMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63
Query: 374 HKDDPPLPEDDEN--KEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 547
H + D++ D++ +WD++F+KVDQ TLF+LILAANYL+I GLLD+TCK
Sbjct: 64 HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123
Query: 548 VANMIKGKTPEEIRKTFNIKNDFTAAE 628
VA+ ++GKTPE++R FNIKND+T E
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEE 150
>At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At11), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 152
Score = 124 bits (298), Expect = 6e-29
Identities = 71/145 (48%), Positives = 89/145 (61%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L SSD + F V+ +A S TI PL NV S IL KVI++
Sbjct: 6 IVLMSSDGQSFEVEEAVAIQSQTIA----HMVEDDCVADGIPLANVESKILVKVIEYCKK 61
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 553
H D P +E D+++WD F+ ++Q T+FELILAANYL+IK LLD+TC+TVA
Sbjct: 62 HHVDEANPISEE-------DLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVA 114
Query: 554 NMIKGKTPEEIRKTFNIKNDFTAAE 628
+MIKGKTPEEIR TFNI+NDFT E
Sbjct: 115 DMIKGKTPEEIRSTFNIENDFTPEE 139
>At4g34470.1 68417.m04901 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At12), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 152
Score = 122 bits (293), Expect = 3e-28
Identities = 73/147 (49%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWAT- 370
I L SSD + F V+ +A S TI PL NV S IL KVI++
Sbjct: 6 IVLMSSDGQSFEVEEAVAIQSQTIA----HMVEDDCVADGIPLANVESKILVKVIEYCKK 61
Query: 371 YHKDDP-PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 547
YH D+ P+ E+D NK WD F+ ++Q T+FELILAANYL+IK L D+TC+T
Sbjct: 62 YHVDEANPISEEDLNK---------WDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQT 112
Query: 548 VANMIKGKTPEEIRKTFNIKNDFTAAE 628
VA+MIKGKTPEEIR TFNI+NDFT E
Sbjct: 113 VADMIKGKTPEEIRSTFNIENDFTPEE 139
>At2g25700.1 68415.m03080 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At3), putative E3 ubiquitin ligase; similar
to fimbriata-associated protein fap1 GI:2673868 from
[Antirrhinum majus]
Length = 163
Score = 118 bits (284), Expect = 3e-27
Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L+SSD E F V+ +A S TIK PLPNV AIL KVI++
Sbjct: 8 IILKSSDGESFEVEEAVAVESQTIK----HMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63
Query: 374 HKDDPPLPEDDENKEKRTD--DISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 547
H + D++ T+ ++ +WD DF+KVD TLF+L+ AANYL+I GLLD+TCK
Sbjct: 64 HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123
Query: 548 VANMIKGKTPEEIRKTFNIKNDFTAAE 628
VA+ ++GKTP ++R+ FNIKND+T E
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEE 150
>At3g25650.1 68416.m03192 Skp1 family protein similar toSkp1
[Medicago sativa] GI:4959710, fimbriata-associated
protein [Antirrhinum majus] GI:2673870, UIP2
[Arabidopsis thaliana] GI:3719211; contains Pfam profile
PF01466: Skp1 family, dimerisation domain
Length = 177
Score = 111 bits (267), Expect = 4e-25
Identities = 67/154 (43%), Positives = 94/154 (61%), Gaps = 9/154 (5%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L SSD E F V+ +A+ +K PL NV IL V+++
Sbjct: 6 IVLTSSDGESFQVEEVVARKLQIVK----HLLEDDCVINEIPLQNVTGNILSIVLEYCKK 61
Query: 374 HKDDPPLPEDD---ENKEKRTDD-----ISSWDADFLK-VDQGTLFELILAANYLDIKGL 526
H DD + +DD E K+K+ DD + +WDA+F+K +D T+F+LILAANYL+++GL
Sbjct: 62 HVDD--VVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGL 119
Query: 527 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAE 628
L +TC+TVA+ IK KTPEE+R+ FNI+NDFT E
Sbjct: 120 LGLTCQTVADYIKDKTPEEVRELFNIENDFTHEE 153
>At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At18), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 [Arabidopsis thaliana]
Length = 183
Score = 111 bits (266), Expect = 5e-25
Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L SSD E F +D +A+ + I PL NV IL K+I++A
Sbjct: 31 ILLTSSDGESFEIDEAVARKFLII----VHMMEDNCAGEAIPLENVTGDILSKIIEYAKM 86
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFL-KVDQGTLFELILAANYLDIKGLLDVTCKTV 550
H ++P ++DE +K D SWDA F+ K+D T+F++ILAANYL+ +GLL +TV
Sbjct: 87 HVNEPSEEDEDEEAKKNLD---SWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTV 143
Query: 551 ANMIKGKTPEEIRKTFNIKNDFTAAE 628
A+ IK KTPEE+R+ FNI+NDFT E
Sbjct: 144 ADYIKDKTPEEVREIFNIENDFTPEE 169
>At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At9), putative E3 ubiquitin ligase; similar
to Skp1 homolog SKP1a GI:3068807 from [Arabidopsis
thaliana]
Length = 153
Score = 107 bits (258), Expect = 5e-24
Identities = 62/146 (42%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAK-CSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWAT 370
I L+SSD F V+ E A+ C + I PLPNV IL VI++
Sbjct: 6 IILKSSDGHSFEVEEEAARQCQIIIA----HMSENDCTDNGIPLPNVTGKILAMVIEYCN 61
Query: 371 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 550
H D P D DD+ WD +F++ D T+F+LI AANYL+IK L D+ C+TV
Sbjct: 62 KHHVDAANPCSD-------DDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTV 114
Query: 551 ANMIKGKTPEEIRKTFNIKNDFTAAE 628
A +IKG TPE+IR+ FNI+ND T E
Sbjct: 115 AEIIKGNTPEQIREFFNIENDLTPEE 140
>At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At5), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 153
Score = 102 bits (244), Expect = 2e-22
Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 6/151 (3%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L+SSD + F +D ++A+ S+ I PL NV S ILK VI +
Sbjct: 5 IMLKSSDGKSFEIDEDVARKSIAIN----HMVEDGCATDVIPLRNVTSKILKIVIDYCEK 60
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGT-LFELILAANYLDIKGLLDVTCKTV 550
H K K +D+ WDADF+K + T LF++++AANYL+I+ LLD+TCKTV
Sbjct: 61 HV-----------KSKEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTV 109
Query: 551 -----ANMIKGKTPEEIRKTFNIKNDFTAAE 628
A+++ GKTP+EIR FNI+ND TA E
Sbjct: 110 SDLLQADLLSGKTPDEIRAHFNIENDLTAEE 140
>At3g21860.1 68416.m02755 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At10), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 152
Score = 100 bits (240), Expect = 7e-22
Identities = 61/145 (42%), Positives = 79/145 (54%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L+SSD F V+ E A TI PLP V IL+ VI++
Sbjct: 6 IILKSSDGHSFEVEEEAACQCQTIA----HMSEDDCTDNGIPLPEVTGKILEMVIEYCNK 61
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 553
H D P DE D+ WD +F++ Q T+F+LI+AANYL+IK LLD+ C+TVA
Sbjct: 62 HHVDAANPCSDE-------DLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVA 114
Query: 554 NMIKGKTPEEIRKTFNIKNDFTAAE 628
+MIK T E RK FNI+ND+T E
Sbjct: 115 DMIKDNTVEHTRKFFNIENDYTHEE 139
>At3g60010.1 68416.m06700 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At13), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 154
Score = 99 bits (238), Expect = 1e-21
Identities = 60/147 (40%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
+ L SSD E F V+ +A S TI P+ NV IL KVI++
Sbjct: 5 VMLLSSDGESFQVEEAVAVQSQTIA----HMIEDDCVANGVPIANVTGVILSKVIEYCKK 60
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFLKV--DQGTLFELILAANYLDIKGLLDVTCKT 547
H D E+ D++ WDA+F+K TLF+++LAANYL+IK LLD+ C+T
Sbjct: 61 HV------VSDSPTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQT 114
Query: 548 VANMIKGKTPEEIRKTFNIKNDFTAAE 628
VA+MI GK P+EIR I+NDFT E
Sbjct: 115 VADMITGKKPDEIRALLGIENDFTPEE 141
>At2g03170.1 68415.m00270 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At14), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 149
Score = 99.5 bits (237), Expect = 2e-21
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L SSD E F V+ +A+ ++ PL NV IL V+++
Sbjct: 6 IVLSSSDGESFEVEEAVARKLKIVE----HMIEDDCVVTEVPLQNVTGKILSIVVEYCKK 61
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLDIKGLLDVTCKTV 550
H D + +D+ +WD +F+K DQ T+F+L+LAANYL+IKGLLD++ +TV
Sbjct: 62 HVVD-----------EESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTV 110
Query: 551 ANMIKGKTPEEIRKTFNIKNDFTAAE 628
A+ IK KTPEEIR+ FNI+NDFT E
Sbjct: 111 ADRIKDKTPEEIREIFNIENDFTPEE 136
>At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At19), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 200
Score = 91.9 bits (218), Expect = 3e-19
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 4/97 (4%)
Frame = +2
Query: 350 KVIQWATYHKDDPPLPED---DENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLDI 517
K ++ A DD +PE D+ E + + ++ WDA F+K D T+F++ILAANYL++
Sbjct: 81 KTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNV 140
Query: 518 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAE 628
+GL D+ KT+A+ IK TPEE+R+ FNI+NDFT E
Sbjct: 141 QGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEE 177
>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 170
Score = 90.6 bits (215), Expect = 7e-19
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 8/153 (5%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L SSD+E F V+ +A+ I PL NV IL VI++
Sbjct: 6 IVLTSSDDESFEVEEAVARKLKVIA----HMIDDDCADKAIPLENVTGNILALVIEYCKK 61
Query: 374 HKDDPPLPEDD------EN-KEKRTDDISSWDADFLK-VDQGTLFELILAANYLDIKGLL 529
H D DD EN E+ +++ +WDA+F+K D T+ +LILA NYL+++ LL
Sbjct: 62 HVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLL 121
Query: 530 DVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAE 628
+TC+TVA+ +K +PEE+R+ FNI+ND+T E
Sbjct: 122 GLTCQTVADHMKDMSPEEVRELFNIENDYTPEE 154
>At3g21830.1 68416.m02752 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At8), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 152
Score = 83.4 bits (197), Expect = 1e-16
Identities = 51/145 (35%), Positives = 77/145 (53%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L+SS+ + F ++ E A+ TI + S IL+ VI++
Sbjct: 6 IMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVL----KMTSEILEMVIEYCNK 61
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 553
H D P D DD+ WD +F++ D+ T+F L AAN+L+ K LL + +TVA
Sbjct: 62 HHVDAANPCSD-------DDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVA 114
Query: 554 NMIKGKTPEEIRKTFNIKNDFTAAE 628
+MIKG TP+++R+ FNI+ND T E
Sbjct: 115 DMIKGNTPKQMREFFNIENDLTPEE 139
>At2g20160.1 68415.m02357 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At17), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 150
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L SSD+E F +D +A+ + L NV IL +I++
Sbjct: 6 IVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIR----LQNVTGKILAIIIEYCKK 61
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLDIKGLLDVTCKTV 550
H DD + ++ +WDA+F+K +D TLF+L+ AA+YL + GL ++ + +
Sbjct: 62 HVDDV----------EAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAI 111
Query: 551 ANMIKGKTPEEIRKTFNIKNDFTAAE 628
A+ KT EIR+ FNI+ND+T E
Sbjct: 112 ADYTADKTVNEIRELFNIENDYTPEE 137
>At2g45950.1 68415.m05713 SKP1 family protein similar to
glycoprotein FP21 SP:P52285 from [Dictyostelium
discoideum]; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 342
Score = 66.9 bits (156), Expect = 1e-11
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPN-VNSAILKKVIQWAT 370
I LQ++D + V+ E+A I LP VN A+ ++ +
Sbjct: 18 IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCR 77
Query: 371 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 550
+H+ LP NKE++T +D F+++D L EL AA+ L +K L+D+T + +
Sbjct: 78 FHQ----LP-GRSNKERKT-----YDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRAL 127
Query: 551 ANMIKGKTPEEIRKTFNIKNDFTAAE 628
A +I+GK PEEIR+ F++ +D T E
Sbjct: 128 ARIIEGKNPEEIREIFHLPDDLTEEE 153
>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
discoideum}; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 351
Score = 65.7 bits (153), Expect = 2e-11
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPN-VNSAILKKVIQWAT 370
I L+++D + V+ E+A I LP VN A+L + +
Sbjct: 18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCR 77
Query: 371 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 550
+H+ +P NKE++ +D F+++D L EL AA+ L +K L+D+T + +
Sbjct: 78 FHQ----VP-GRSNKERKV-----YDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRAL 127
Query: 551 ANMIKGKTPEEIRKTFNIKNDFTAAE 628
A +I+GKTPEEIR+ F++ +D T E
Sbjct: 128 ARIIEGKTPEEIREIFHLPDDLTEEE 153
>At3g21840.1 68416.m02753 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At7), putative E3 ubiquitin ligase; similar
to Skp1 homolog GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 125
Score = 63.3 bits (147), Expect = 1e-10
Identities = 43/123 (34%), Positives = 63/123 (51%)
Frame = +2
Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
I L+SSD ++F ++ E A+ TI P+ NV S IL+ VI++
Sbjct: 6 IMLKSSDGKMFEIEEETARQCQTIA----HMIEAECTDNVIPVSNVTSEILEMVIEYCNK 61
Query: 374 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 553
H D P DE D+ WD +F++ DQ T+F L+ AA L IK LL + +TVA
Sbjct: 62 HHVDAANPCSDE-------DLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVA 114
Query: 554 NMI 562
+M+
Sbjct: 115 DMV 117
>At3g53060.1 68416.m05848 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At6), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 85
Score = 57.2 bits (132), Expect = 8e-09
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = +2
Query: 317 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLK-VDQGTLFELI 493
PLPNV S IL VI++ H E+KE +D+ WDA+F+K ++Q LF+++
Sbjct: 17 PLPNVTSKILLLVIEYCKKHVV--------ESKE---EDLKKWDAEFMKKMEQSILFDVM 65
Query: 494 LAANYLDIKGLLDVT 538
+AANYL+I+ LLD+T
Sbjct: 66 MAANYLNIQSLLDLT 80
>At3g28760.1 68416.m03590 expressed protein contains Pfam PF01959:
predicted 3-dehydroquinate synthase
Length = 422
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 506 YLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKND 613
+++ K ++D T VA++ + TPEE+R + NI+N+
Sbjct: 117 FIEEKKVIDGTGNVVASVFEVSTPEELR-SLNIENE 151
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 350 KVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVD---QGTLFE 487
+++ W HK++ P+ DE KE+ S +DA VD +GT +E
Sbjct: 82 QILHWRRGHKEECRSPDYDEEKEEYVQ--SDYDAKESNVDFPSRGTAYE 128
>At4g11000.1 68417.m01789 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 406
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 452 DFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKT 595
D+ D T+F + N ++ LL T K A + GKT +I +T
Sbjct: 139 DWKDEDGNTVFHIAALINQTEVMKLLRKTVKVKAKNLDGKTAMDILQT 186
>At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
Length = 653
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 317 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKV-DQGTLFELI 493
P P++N +K + Y PP PE K + T+D+ + D + DQG F L
Sbjct: 400 PEPDMNE--IKALPPPENYTPPPPPEPEPQPEKPQFTEDLVNLREDEVTADDQGNKFALA 457
Query: 494 LAA 502
L A
Sbjct: 458 LFA 460
>At1g05000.1 68414.m00501 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 215
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 628 FCSSEIILNVERFTDFFRSLSFDHVCYSFTCDI 530
F +++ ++ +RF + F SF H+ SF+C I
Sbjct: 182 FAAAKARVSDQRFMEIFDVSSFSHIPMSFSCSI 214
>At1g55850.1 68414.m06405 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-5 [gi:9622882]
from Zea mays
Length = 729
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 404 DENKEKRTDDISSWDADFLKVDQGTLFELIL 496
+E + K D S WDAD + + GT+ ++++
Sbjct: 226 EEARVKYGDGFSQWDADATRRNHGTILQVLV 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,574
Number of Sequences: 28952
Number of extensions: 217861
Number of successful extensions: 609
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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