Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c22
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    85   5e-17
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    64   1e-10
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    36   0.022
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac...    35   0.067
At3g58940.1 68416.m06568 F-box family protein contains F-box dom...    30   1.9  
At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xy...    29   2.5  
At4g00750.1 68417.m00102 dehydration-responsive family protein s...    29   2.5  
At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein si...    29   3.3  
At1g27990.1 68414.m03428 expressed protein                             29   3.3  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    29   4.4  
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil...    29   4.4  
At2g25130.1 68415.m03006 armadillo/beta-catenin repeat family pr...    29   4.4  
At3g11640.1 68416.m01427 expressed protein                             28   5.8  
At3g06790.2 68416.m00807 plastid developmental protein DAG, puta...    28   5.8  

>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 49/160 (30%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
 Frame = +3

Query: 147 KTQMKAYSTEVTPRPLTMLTED-ELAMRETIRKLATEQISPLVKKMEDEHRI--DDGIRQ 317
           KT+ +++S+    R  ++L +D +L  +E++ K A + I+P  ++++  +    D  + +
Sbjct: 16  KTRRRSFSS----RSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDVNLWK 71

Query: 318 MLFDNGLMGIETPVEYSGSGCNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGT 497
           ++ +  L GI  P EY G G  +L   + +EE+SR   +VA     H+ L  +  ++ GT
Sbjct: 72  LMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGT 131

Query: 498 EEQKKKYLTKLCT-EYAGSFCLTEPSSGSDAFALKTVAKK 614
             QK+KYL KL + E+ G+  ++EP++GSD   +K  A+K
Sbjct: 132 AAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEK 171



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +1

Query: 628 YIISGSKMWISNSDVAGVFLVMTNADPSKGYKGITCFIVER 750
           YI++G+KMW +N   A   +V    D   G KGIT FI+E+
Sbjct: 176 YILNGNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEK 216


>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
 Frame = +3

Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
           +LT +E A+R+ +R+   ++++P++ +  ++      I   L   G+ G      Y   G
Sbjct: 54  LLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIK-GYGCPG 112

Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLC-TEYAGSF 554
            +     +   E++RVD + + ++ +H++L        G+E QK+KYL  L        +
Sbjct: 113 LSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACW 172

Query: 555 CLTEPSSGSDAFALKTVAKK 614
            LTEP +GSDA  L T A K
Sbjct: 173 ALTEPDNGSDASGLGTTATK 192


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 402 VVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSG 578
           ++E +  VD ++   + +  +L     + LGT++ + KY   +   +Y G F +TE   G
Sbjct: 132 IMEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYTGCFAMTELHHG 191

Query: 579 SDAFALKTVA 608
           S+   L+T A
Sbjct: 192 SNVQGLQTTA 201


>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
          Length = 675

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 441 AYVDIHNTLVNSLFMKLGTEEQKKKYLTKL-CTEYAGSFCLTEPSSGSDAFALKTVA 608
           AYVD+H  +        GTEEQ+KK+L+     +  G +  TE   GS+   L+T A
Sbjct: 97  AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA 153


>At3g58940.1 68416.m06568 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 618

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 9   IEIASAEAARFHSANANRIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPR 188
           I+    ++  F      ++  + L  VV  +I+  W+S A +   ++TQM     E+ PR
Sbjct: 402 IDAEENDSTNFEVPRILKVVAYRLHDVVSTEIVGHWQSSAQSGGWSQTQMDEMYYELAPR 461


>At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595; contains Pfam profile PF00331:
           Glycosyl hydrolase family 10
          Length = 576

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  RRVVGNKILEQWRSQATAAVGAKTQMKAYSTEV 179
           + ++GNK  + W +Q         +MK YSTEV
Sbjct: 233 KNILGNKAYQNWFTQRFTVTTFANEMKWYSTEV 265


>At4g00750.1 68417.m00102 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 187 RGVTSVLYAFI*VFAPTAAVAWDL-HCSKILLPTTRRNGNIFI 62
           RGV +++     +  P  A A+D+ HCS+ L+P  + NG   I
Sbjct: 261 RGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTYLI 303


>At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 352

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  RRVVGNKILEQWRSQATAAVGAKTQMKAYSTEV 179
           + ++GN+  E W +Q         +MK YSTEV
Sbjct: 92  KNILGNQAYENWFTQRFTVTTFANEMKWYSTEV 124


>At1g27990.1 68414.m03428 expressed protein
          Length = 271

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 255 VRSLVSVLFPSWRVHLLSAWSKVV 184
           VR+LV +L+  WR+ ++  WSK V
Sbjct: 166 VRALVPLLYTVWRIFVIIGWSKDV 189


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5)
           identical to HAC5 (GI:21105780) [Arabidopsis thaliana];
           similar to CREB-binding protein GB:S39162 from [Homo
           sapiens]
          Length = 1670

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 422 SRQFFHHQHHCQEIAAGTAVFYRSFDAHQ 336
           +RQ  HH  HC + A    VF ++F   Q
Sbjct: 669 TRQLIHHYKHCGDEACPVCVFVKNFKEKQ 697


>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
           similarity to acyl-CoA oxidase [Arabidopsis thaliana]
           GI:3044214
          Length = 664

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 444 YVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT--EYAGSFCLTEPSSGSDAFALKTVA 608
           ++D+H  +        GTE+Q++K+L+ L T  +  G +  TE   GS+   L+T A
Sbjct: 98  FLDLHWGMFVPAIKGQGTEQQQQKWLS-LATKMQIIGCYAQTELGHGSNVQGLETTA 153


>At2g25130.1 68415.m03006 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 468

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/87 (25%), Positives = 44/87 (50%)
 Frame = +3

Query: 99  KILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDELAMRETIRKLATEQISPLVKK 278
           ++++  +++A A   A  +  A ++EV      +L +D++  R T+  L    I PLV  
Sbjct: 107 RVVKDLQAEAEAEAEAAEKKIAAASEVR-----LLAKDDIEARVTLAMLGA--IPPLVSM 159

Query: 279 MEDEHRIDDGIRQMLFDNGLMGIETPV 359
           ++DE + +D +   L+    +GI   V
Sbjct: 160 IDDESQSEDALIASLYALLNLGIGNDV 186


>At3g11640.1 68416.m01427 expressed protein
          Length = 186

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 276 KMEDEHRIDDGIRQMLFDNGL-MGIETPVEYSGSGCNFLT 392
           ++ED+   DD +     DNG  + ++ PVEYSG    FLT
Sbjct: 108 ELEDD---DDDVISAEVDNGFEVQVDIPVEYSGDPTPFLT 144


>At3g06790.2 68416.m00807 plastid developmental protein DAG,
           putative similar to DAG protein, chloroplast precursor
           [Garden snapdragon] SWISS-PROT:Q38732
          Length = 244

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 375 GCNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTE-YAG 548
           GC++   ++V+E     DP      ++ N+ V +L   LG EE+ KK +  +CT  Y G
Sbjct: 91  GCDYEHWLIVMEF---TDPKPTEE-EMINSYVKTLTSVLGCEEEAKKKIYSVCTSTYTG 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,294,087
Number of Sequences: 28952
Number of extensions: 340049
Number of successful extensions: 1009
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)