Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c16
         (352 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59730.1 68416.m06664 receptor lectin kinase, putative simila...    29   0.66 
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ...    28   1.5  
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ...    28   2.0  
At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containi...    27   4.6  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    26   6.1  
At4g13620.1 68417.m02120 AP2 domain-containing transcription fac...    26   6.1  
At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...    26   8.1  
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein...    26   8.1  

>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains pfam domains PF00139:
           Legume lectins beta domain and PF00069: Protein kinase
           domain
          Length = 523

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 258 LHY-VLLLSSPIRALSSVRWGNLPFLPPSKEKCSDR 154
           LHY VL+ + P      + +G +P LPP  +K SDR
Sbjct: 239 LHYMVLVYTYPEAVYQPLEFGRVPTLPPYPKKPSDR 274


>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
           ribosomal protein S27A (RPS27aC) identical to GI:166933,
           GI:166934
          Length = 157

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 311 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCH 180
           KHK+V ++++   K+     +    LR+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKIDGSGKV--QRLRKECPNATCGAGTFMASH 135


>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
           ribosomal protein S27A (RPS27aB) identical to GI:166936
          Length = 157

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 311 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSCH 180
           KHK+V ++++   K+     +    LR+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKVDGSGKV--QRLRKECPNATCGAGTFMASH 135


>At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 541

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 344 LMIYNIILLDSKHKRVHVSIILRTKL 267
           L + NI+L D KHK +   I+ R  +
Sbjct: 500 LSVVNILLCDMKHKNIEPDIVTRNNV 525


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 184 ATK*REMFRPPQPPSRLVLKH*QRMCCC 101
           A + R + RPP PP  L +   + +CCC
Sbjct: 61  AMRRRVLPRPPPPPPPLPMFDAEVLCCC 88


>At4g13620.1 68417.m02120 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 [Arabidopsis thaliana] GI:2281633;
           contains Pfam profile PF00847: AP2 domain
          Length = 388

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 243 LLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 142
           LL S I+ +SS +  N P  PP K    ++ N H
Sbjct: 306 LLESKIQQISSSQVSNSPSPPPPKVGTPEQKNHH 339


>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 126 FSTRRDGGCGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSA 257
           F  R DGG    N+ + + A   GSP  R    E+  + A ++A
Sbjct: 423 FLLRVDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAA 466


>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
           Nrap family protein contains Pfam profile PF03813: Nrap
           protein; similar to nucleolar RNA-associated protein
           alpha (GI:18539461) [Mus musculus]
          Length = 1053

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 155 RSEHFSLLGGKKGRFP 202
           RS+H S++ G +GRFP
Sbjct: 726 RSQHASMINGLQGRFP 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,858,352
Number of Sequences: 28952
Number of extensions: 143958
Number of successful extensions: 350
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)