Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c11
         (310 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S ...   105   5e-24
At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A)           105   5e-24
At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)...    28   1.1  
At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domai...    27   1.9  
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    27   3.4  
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro...    26   4.5  
At5g52950.1 68418.m06570 expressed protein ; expression supporte...    26   5.9  
At3g05830.1 68416.m00654 expressed protein                             26   5.9  
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t...    25   7.8  
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t...    25   7.8  

>At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S
           RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum,
           EMBL:X69979
          Length = 69

 Score =  105 bits (253), Expect = 5e-24
 Identities = 47/69 (68%), Positives = 62/69 (89%)
 Frame = +3

Query: 51  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 230
           MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 231 PPGLQVKEV 257
           PPGL V+++
Sbjct: 61  PPGLSVQDL 69


>At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) 
          Length = 69

 Score =  105 bits (253), Expect = 5e-24
 Identities = 47/69 (68%), Positives = 62/69 (89%)
 Frame = +3

Query: 51  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 230
           MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 231 PPGLQVKEV 257
           PPGL V+++
Sbjct: 61  PPGLSVQDL 69


>At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)
           EXL6 (PMID:11431566); similar to anter-specific
           proline-rich protein (APG) SP:P40602 [Arabidopsis
           thaliana]
          Length = 343

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 36  LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKV 158
           L V +   ++KD KD+L K RR   +  K+K+   N  F +
Sbjct: 125 LRVLSAGDQVKDFKDYLKKLRRVVKRKKKVKEIVSNAVFLI 165


>At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 540

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 215 FLSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRF-GVFPPRLN 87
           FL L+ VS+  G++ P    L   +L+ LLYFDR+  +  P LN
Sbjct: 477 FLDLVRVSESYGLKFPREFAL---LLKQLLYFDRYTRLLAPNLN 517


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 63  IKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFL 176
           +KDI   L++    +  S+  KK+  N++ K+R  RF+
Sbjct: 531 MKDIPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFI 568


>At2g31900.1 68415.m03897 myosin family protein contains Pfam
            profiles: PF00063 myosin head (motor domain), PF01843 DIL
            domain, PF00612 IQ calmodulin-binding motif, PF02736
            myosin N-terminal SH3-like domain
          Length = 1556

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 90   KARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 257
            KA  +DAK+ +I K   N+          Y  +I DKE A+   +  PP   +KEV
Sbjct: 911  KADLEDAKAQEIAKLQNNLTELQEKLDEAYAAIIRDKEAAKLAIEQAPP--IIKEV 964


>At5g52950.1 68418.m06570 expressed protein ; expression supported
           by MPSS
          Length = 945

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 63  IKDIKDFLIKARRKDAKSVKIKKN 134
           +KD KD + K ++KD+ SV  ++N
Sbjct: 670 LKDPKDLVAKFKKKDSSSVASERN 693


>At3g05830.1 68416.m00654 expressed protein
          Length = 336

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 60  EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDK 200
           EIK+I+D + + +  + +S   +K  +N  FK+  S  +  LV+  K
Sbjct: 289 EIKEIRDLISEKQNLNNESWDKQKFWDNSGFKIVVSMSMLMLVVVSK 335


>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 438

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 24  AG*KLFVFNMPREIKD 71
           AG  LF++N+PRE +D
Sbjct: 337 AGANLFIYNIPREFED 352


>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 429

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 24  AG*KLFVFNMPREIKD 71
           AG  LF++N+PRE +D
Sbjct: 328 AGANLFIYNIPREFED 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,533,259
Number of Sequences: 28952
Number of extensions: 92912
Number of successful extensions: 265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)