Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10c02
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin... 36 0.032
At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pin... 35 0.042
At5g14310.1 68418.m01673 expressed protein low similarity to PrM... 33 0.13
At3g27320.1 68416.m03414 expressed protein low similarity to PrM... 32 0.39
At5g62180.1 68418.m07805 expressed protein similar to PrMC3, Pin... 31 0.68
At2g45610.1 68415.m05671 expressed protein low similarity to PrM... 31 0.68
At1g49660.1 68414.m05569 expressed protein 31 0.68
At3g48700.1 68416.m05318 expressed protein similar to PrMC3 [Pin... 31 0.90
At3g48690.1 68416.m05317 expressed protein similar to PrMC3 [Pin... 30 1.2
At3g23370.1 68416.m02947 expressed protein ; expression supporte... 30 1.2
At3g05120.1 68416.m00556 expressed protein low similarity to PrM... 30 1.2
At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pin... 30 1.6
At2g45600.1 68415.m05670 expressed protein low similarity to PrM... 29 2.1
At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pin... 29 2.7
At5g42130.1 68418.m05129 mitochondrial substrate carrier family ... 29 3.6
At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin... 28 4.8
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin... 28 4.8
At2g32610.1 68415.m03981 cellulose synthase family protein simil... 28 4.8
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR... 28 6.3
At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) / m... 28 6.3
At1g69540.1 68414.m07996 MADS-box family protein contains Pfam p... 28 6.3
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 27 8.4
>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 35.5 bits (78), Expect = 0.032
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +2
Query: 347 NCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDLHGPELLML---KDV 517
N + V++P +A + +LP+LV HGGGF GS + L L
Sbjct: 72 NDTWTRVYIPDAAAASPSV-----TLPLLVYFHGGGFCVGSAAWSCYHDFLTSLAVKARC 126
Query: 518 IVVNFNYRLAIFGYLSLASHKIPGNNGLRDMVTLLKWVQRNAKVFGG 658
++V+ NYRLA H++P D V ++ W+ + GG
Sbjct: 127 VIVSVNYRLA-------PEHRLPA--AYDDGVNVVSWLVKQQISTGG 164
>At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 336
Score = 35.1 bits (77), Expect = 0.042
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +2
Query: 353 IYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDLHGPELLML---KDVIV 523
++A ++VP + T +S + LP++V HGGGF GS + + L L +V
Sbjct: 71 VWARLYVPMTTTKSSV-----SKLPLIVYFHGGGFCVGSASWLCYHEFLARLSARSRCLV 125
Query: 524 VNFNYRLA 547
++ NYRLA
Sbjct: 126 MSVNYRLA 133
>At5g14310.1 68418.m01673 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 446
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 422 LPILVNIHGGGFQTGSGN---RDLHGPELLMLKDVIVVNFNYRLA 547
LP+++ HGGG+ +GS + D + + DVIV+ YRLA
Sbjct: 151 LPVMLQFHGGGWVSGSSDSAANDFFCRRIAKVCDVIVLAVGYRLA 195
>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 460
Score = 31.9 bits (69), Expect = 0.39
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 293 SRDITYGSITVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSG 472
SR +YG T + + + P+S+ NS LP+++ HGGG+ +GS
Sbjct: 129 SRRNSYGYTTGSSSPEAGSSDVYRGYAPSSSGGNS------RKLPVMLQFHGGGWVSGSN 182
Query: 473 N---RDLHGPELLMLKDVIVVNFNYRLA 547
+ D + D+IV+ YRLA
Sbjct: 183 DSVANDFFCRRMAKHCDIIVLAVGYRLA 210
>At5g62180.1 68418.m07805 expressed protein similar to PrMC3, Pinus
radiata, GI:5487873
Length = 327
Score = 31.1 bits (67), Expect = 0.68
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = +2
Query: 356 YANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDL-HG--PELLMLKDVIVV 526
+ +++P+SA +N + LPI+V HGGGF S + L H E+ + IVV
Sbjct: 60 WLRLYLPSSA-VNEGNV-SSQKLPIVVYYHGGGFILCSVDMQLFHDFCSEVARDLNAIVV 117
Query: 527 NFNYRLAIFGYLSLASHKIPGNNGLRDMVTLLKWVQ 634
+ +YRLA H++P D V L W++
Sbjct: 118 SPSYRLA-------PEHRLPA--AYDDGVEALDWIK 144
>At2g45610.1 68415.m05671 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 324
Score = 31.1 bits (67), Expect = 0.68
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = +2
Query: 287 CPSRDITYGSITVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGG---F 457
CP + +T+ E + +F P + N + + LPI++++HG G +
Sbjct: 41 CPGKLAASKDVTINH----ETGVSVRIFRPTNLPSNDNAVAR---LPIIIHLHGSGWILY 93
Query: 458 QTGSGNRDLHGPELLMLKDVIVVNFNYRLAIFGYLSLASHKIPGNNGLRDMVTLLKWVQR 637
S D ++ VIVV+ +YRL H++P D + L WV++
Sbjct: 94 PANSAANDRCCSQMASELTVIVVSVHYRLP-------PEHRLPAQ--YDDALDALLWVKQ 144
>At1g49660.1 68414.m05569 expressed protein
Length = 319
Score = 31.1 bits (67), Expect = 0.68
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 293 SRDITYGSITVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSG 472
S D TY ++ EN + +F+P +T +L N LP+L+ IHGG + S
Sbjct: 33 SLDPTYDVVSKDVIYSPENNLSVRLFLPHKST----KLTAGNKLPLLIYIHGGAWIIESP 88
Query: 473 NRDLHG---PELLMLKDVIVVNFNYRLA 547
L+ E++ + + V+ YR A
Sbjct: 89 FSPLYHNYLTEVVKSANCLAVSVQYRRA 116
>At3g48700.1 68416.m05318 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 30.7 bits (66), Expect = 0.90
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Frame = +2
Query: 344 ENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDLHGPEL---LMLKD 514
+N + +++P A E LP+LV HGGGF + + L + D
Sbjct: 50 DNNLSLRIYLPEKAATAETEASV--KLPLLVYFHGGGFLVETAFSPTYHTFLTAAVSASD 107
Query: 515 VIVVNFNYRLAIFGYLSLASHKIPGNNGLRDMVTLLKWV 631
+ V+ +YR A H IP D T LKWV
Sbjct: 108 CVAVSVDYRRA-------PEHPIP--TSYDDSWTALKWV 137
>At3g48690.1 68416.m05317 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 324
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 275 EGPACPSRDITYGSITVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGG 454
E PS + G ++ ++N + +++P A +D + LP+LV HGGG
Sbjct: 27 EATVPPSSEPQNGVVSKDVVYSADNNLSVRIYLPEKAAAETD-----SKLPLLVYFHGGG 81
Query: 455 F 457
F
Sbjct: 82 F 82
>At3g23370.1 68416.m02947 expressed protein ; expression supported
by MPSS
Length = 717
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 317 ITVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRD 481
+T+K SENCI+++V + S + DN + I +I F + G++D
Sbjct: 13 VTLKNVAESENCIHSSVKEEIGSEDASQSVAADNKICITSSIKEESFVSEMGSQD 67
>At3g05120.1 68416.m00556 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 345
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 356 YANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDLHGP---ELLMLKDVIVV 526
YA+ P S L+ ++ + + +P+++ HGG F S N ++ L+ L +VV
Sbjct: 85 YADQEQPPSI-LDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVV 143
Query: 527 NFNYRLA 547
+ NYR A
Sbjct: 144 SVNYRRA 150
>At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 422 LPILVNIHGGGFQTGSGNRDLHGP---ELLMLKDVIVVNFNYRLA 547
+P++V HGG F S N ++ L+ L +VV+ NYR A
Sbjct: 104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRA 148
>At2g45600.1 68415.m05670 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 329
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 413 DNSLPILVNIHGGGFQTGSGNRDLHGPELLMLKD---VIVVNFNYRLAIFGYLSLASHKI 583
++ LPILV HGGGF S + D I+++ YRLA H++
Sbjct: 63 ESKLPILVYFHGGGFILYSAASAPFHESCTKMADRLQTIILSVEYRLA-------PEHRL 115
Query: 584 PGNNGLRDMVTLLKWVQRNAK 646
P D V + W++ A+
Sbjct: 116 PA--AYEDAVEAILWLRDQAR 134
>At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 358
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 422 LPILVNIHGGGFQTGSGNRDLHGP---ELLMLKDVIVVNFNYR 541
+P+L+ HGG F S N ++ L+ + V+VV+ +YR
Sbjct: 106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYR 148
>At5g42130.1 68418.m05129 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 412
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 654 PNTFAFLCTHFSSVTMSRSPLL--PGIL*EARDKYPKMA 544
PN F L THFS +T +SP++ P + ++ K PK +
Sbjct: 22 PNEFNSLFTHFSDLTSVQSPIVRNPKLKTKSSQKPPKFS 60
>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 419 SLPILVNIHGGGFQTGSGN-RDLHGPELLMLK--DVIVVNFNYRLAIFGYLSLASHKIPG 589
+LP++V HGGGF GS + H L + + +VV+ +YRLA H++P
Sbjct: 75 ALPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDYRLA-------PEHRLPA 127
Query: 590 NNGLRDMVTLLKWV 631
D +L W+
Sbjct: 128 --AFEDAEAVLTWL 139
>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 419 SLPILVNIHGGGFQTGSGN-RDLHGPELLMLK--DVIVVNFNYRLAIFGYLSLASHKIPG 589
+LP++V HGGGF GS + H L + + +VV+ +YRLA H++P
Sbjct: 75 ALPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDYRLA-------PEHRLPA 127
Query: 590 NNGLRDMVTLLKWV 631
D +L W+
Sbjct: 128 --AFEDAEAVLTWL 139
>At2g32610.1 68415.m03981 cellulose synthase family protein similar
to Zea mays cellulose synthase-3 [gi:9622878], -2
[gi:9622876], -1 [gi:9622874]
Length = 757
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 5 ISDSTMFYTVSSVTLILIGSAIYAESFTKKCDVLVK--LDSGPVCGREESANKNTKYFSF 178
++ S+ +++ +TL L+G + TKK K L SGP G + N + F F
Sbjct: 609 VATSSWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLFKFEF 668
Query: 179 QG 184
G
Sbjct: 669 DG 670
>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1294
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 504 INNSGPCKSLLPDPVWNPPPWIFTNM 427
+ ++ C+ ++ D VW P P FTNM
Sbjct: 1142 LKDADACELVVMDEVWYPDPKAFTNM 1167
>At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) /
multidrug transporter-like protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296, putative multidrug efflux protein NorM -
Vibrio parahaemolyticus, EMBL:AB010463; contains Pfam
profile PF01554: Uncharacterized membrane protein
family; identical to cDNA multidrug transporter-like
protein (tt12) GI:13624642, SP|Q9LYT3 TRANSPARENT TESTA
12 protein {Arabidopsis thaliana}, multidrug
transporter-like protein [Arabidopsis thaliana]
GI:13624643
Length = 507
Score = 27.9 bits (59), Expect = 6.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 442 PRWWVPNRIWQ*RFAWT 492
PRWW+ +W+ + WT
Sbjct: 41 PRWWLKLAVWESKLLWT 57
>At1g69540.1 68414.m07996 MADS-box family protein contains Pfam
profile: PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 378
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 71 YAESFTKKCDVLVKLDSGPVCGREESANKNTKYFSF 178
Y+ F+K D+L KL++G + G N+ SF
Sbjct: 258 YSGLFSKSSDILQKLETGSIPGTSADPNQQFSNLSF 293
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 29 TVSSVTLILIGSAIYAESFTKKCDVLVKLDSGPVCGREESAN 154
T++ L IG+AIY + T +C K + P+C + AN
Sbjct: 627 TINKDKLNGIGAAIYQKPATNECYEKRKHNKPPLCKNNDDAN 668
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,587
Number of Sequences: 28952
Number of extensions: 321773
Number of successful extensions: 867
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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