Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b15
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    80   1e-15
At1g63770.2 68414.m07216 peptidase M1 family protein similar to ...    29   2.6  
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ...    29   2.6  
At3g11310.1 68416.m01375 hypothetical protein                          28   4.6  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    28   4.6  
At5g55820.1 68418.m06956 expressed protein                             28   6.1  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   8.0  

>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 50/180 (27%), Positives = 95/180 (52%)
 Frame = +1

Query: 1   NEGFARFYQYYLTASVAPELGYETRFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVSAH 180
           NEGFA +  Y  T S+ PE    T+F+ E  +  +  D ++ +H + ++ VN    +   
Sbjct: 329 NEGFATWVSYLATDSLFPEWKIWTQFLDESTE-GLRLDGLEESHPI-EVEVNHAAEIDEI 386

Query: 181 FSTITYARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGAL 360
           F  I+Y +GA+++RM Q  LG E F K L  Y++   ++ A+   L+ AL+A +      
Sbjct: 387 FDAISYRKGASVIRMLQSYLGAEVFQKSLAAYIKNHAYSNAKTEDLWAALEAGS------ 440

Query: 361 NGYGGITIDTYFRTWSEKAGHPLLTVTINQRTGEMIVTQERWERNTGVSQFPSLWHIPIT 540
               G  ++    +W+++ G+P+++  I  + G++ + Q R+  ++G S     W +P+T
Sbjct: 441 ----GEPVNKLMSSWTKQKGYPVVSAKI--KDGKLELEQSRF-LSSG-SPGEGQWIVPVT 492


>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 945

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1

Query: 184 STITYARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGA 357
           S + YA GA ++RM + LLG + F KG+  Y              F A+  A   D A
Sbjct: 478 SVLLYA-GAEVVRMYKTLLGTQGFRKGIDLYFERHDEQAVTCEDFFAAMRDANNADFA 534


>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 918

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1

Query: 184 STITYARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGA 357
           S + YA GA ++RM + LLG + F KG+  Y              F A+  A   D A
Sbjct: 478 SVLLYA-GAEVVRMYKTLLGTQGFRKGIDLYFERHDEQAVTCEDFFAAMRDANNADFA 534


>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +1

Query: 358 LNGYGGITIDTYFRTWSEKAGHPLLTVTINQRTGEMIVTQERWE----RNTGVSQFPSLW 525
           L  +  IT D + R W +  G PLL    N +T     T E WE     N    QF  L 
Sbjct: 232 LKNHWNITRDAW-RRWCQAVGSPLLKWDANTKT--FGATSEDWENYSKENKRAEQF-RLK 287

Query: 526 HIP 534
           HIP
Sbjct: 288 HIP 290


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 626 VPLLMEVTCCEMNCDGFKSSN 564
           +P  + + CCE NC+ F+S N
Sbjct: 451 IPCKILLLCCEKNCEEFRSQN 471


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 501 ASIAFPSFLCNNHFPSSLVNSNSQKWMSGLLGPSSEVGINC 379
           A ++ PS+L +   PS     N ++ +S LL PSS   I C
Sbjct: 84  AGVSPPSWLWSPSLPSQTSELNKEEIISELLFPSSRPSIVC 124


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 227 LNTYLESKPSLKASATISVKDNSMLLS 307
           L T+LES P+LK+   + V DN  +LS
Sbjct: 815 LPTFLESCPNLKSLILVCVGDNDEMLS 841


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,472
Number of Sequences: 28952
Number of extensions: 297107
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)