Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b11
         (301 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put...    28   1.0  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    27   3.1  
At5g49670.1 68418.m06150 hypothetical protein                          26   4.1  
At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserin...    26   4.1  
At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserin...    26   4.1  
At3g14540.1 68416.m01842 terpene synthase/cyclase family protein...    26   5.4  
At1g22100.1 68414.m02763 hypothetical protein                          25   7.1  
At4g28880.1 68417.m04127 casein kinase, putative similar to simi...    25   9.4  
At4g23230.1 68417.m03350 protein kinase family protein contains ...    25   9.4  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    25   9.4  
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    25   9.4  
At1g66830.1 68414.m07596 leucine-rich repeat transmembrane prote...    25   9.4  

>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
           putative similar to glycerol-3-phosphate dehydrogenase
           GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
           [GI:1020315], Rattus norvegicus [SP|P35571]; contains
           Pfam profile PF01266 FAD dependent oxidoreductase
          Length = 629

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 77  ESQLKGLAKYFNSQTNRGRLNTARA-TYAVMGAVIL 181
           +  L+G   Y++ Q N  RLN   A T A+ GA +L
Sbjct: 217 DKNLRGTVVYYDGQMNDSRLNVGLACTAALAGAAVL 252


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 247 YRNMLINFACNSFLGFRFQCEVK 179
           YRNM  +    +F GFR++C  K
Sbjct: 422 YRNMHCSTCSRAFTGFRYKCSEK 444


>At5g49670.1 68418.m06150 hypothetical protein 
          Length = 1184

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 165 ITAYVALAVFNLPLFV*LLKYFAKPLSW 82
           + A++ + +F + LFV LL  F K L W
Sbjct: 1   MAAFLVMFIFTIALFVALLWVFFKSLPW 28


>At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserine
           dehydrogenase, putative / AK-HSDH, putative similar to
           gb|X71364 [PIR|S46497] aspartate kinase / homoserine
           dehydrogenase from Arabidopsis thaliana
          Length = 916

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 94  LSKILQQSDKQRKIKYGQSHICSNGSSHPLLHTET*IQEMNYKQNLLACFCKGLLSYIVH 273
           L + L+  D QRK      +  + G+  P++ T   + E   K   +   C G LSY+ +
Sbjct: 680 LDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFN 739

Query: 274 N 276
           N
Sbjct: 740 N 740


>At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserine
           dehydrogenase, putative / AK-HSDH, putative similar to
           gb|X71364 [PIR|S46497] aspartate kinase / homoserine
           dehydrogenase from Arabidopsis thaliana
          Length = 859

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 94  LSKILQQSDKQRKIKYGQSHICSNGSSHPLLHTET*IQEMNYKQNLLACFCKGLLSYIVH 273
           L + L+  D QRK      +  + G+  P++ T   + E   K   +   C G LSY+ +
Sbjct: 680 LDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFN 739

Query: 274 N 276
           N
Sbjct: 740 N 740


>At3g14540.1 68416.m01842 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana]
          Length = 602

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 62  DSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVMGA 172
           D SV ES L GL  YF  Q + GR+  A+    ++ A
Sbjct: 317 DRSV-ESHLGGLGPYFEPQYSLGRIIVAKTIMIIVVA 352


>At1g22100.1 68414.m02763 hypothetical protein
          Length = 457

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 160 SNGSSHPLLHTET*IQEMNYKQNLL 234
           S  SSH  LH ET  QE  YK + +
Sbjct: 395 SKSSSHSNLHLETTKQEFEYKVHFI 419


>At4g28880.1 68417.m04127 casein kinase, putative similar to similar
           to casein kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158; contains protein kinase domain,
           Pfam:PF00069
          Length = 415

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 74  DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 187
           +   L G A+Y +  T+ G   + R     +G V+LYF
Sbjct: 169 ENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYF 206


>At4g23230.1 68417.m03350 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 507

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 47  IRMAGDSSVDESQLKGLAKYFNSQTNRGRLNTA 145
           IRM G+ S+D++Q+     + +S  N+  +  A
Sbjct: 20  IRMNGNISIDQNQMNRFKDFVSSTMNQAAVKAA 52


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 262 NLTIPYRNMLINFACNSFLGFRFQCEVK 179
           NL+IP  NML N   ++ L  +F C +K
Sbjct: 828 NLSIPCTNMLSNLFRSADLDSQFACMLK 855


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 23  CSNYIIFQIRMAGDSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 187
           CS+Y++  I   G    D  +L+G+ +  +   N G          +   VILYF
Sbjct: 286 CSDYVVHSICALGKDVWDGKELEGIPEIIDITENDGPFE------VISEGVILYF 334


>At1g66830.1 68414.m07596 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069:
           Eukaryotic protein kinase domain, multiple PF00560:
           Leucine Rich Repeat
          Length = 685

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 283 DFNYVLYNLTIPYRNMLINFACNSFLGFRFQC--EVKDDCS 167
           D +Y   +  IP  N+L+N   N+F G  F C   +K  CS
Sbjct: 242 DLSYNNLSGPIPKFNVLLNAGPNAFQGNPFLCGLPIKISCS 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,850,856
Number of Sequences: 28952
Number of extensions: 93897
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)