Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0128
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica...    28   1.6  
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR...    27   4.9  
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    26   6.5  

>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P31244 DNA
           repair protein RAD16 {Saccharomyces cerevisiae};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 638

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 112 FLKTHPFILCNSGAFHLGIKMP 47
           FL+ HP+ +CNS  FH  IK P
Sbjct: 264 FLRYHPYAMCNS--FHQRIKAP 283


>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 39  SARGIFIPK*KAPELHKIKGCVFKNTCIYNIKKEY 143
           + RGIF+   K PE     G +F N C     K Y
Sbjct: 597 NVRGIFLDMSKVPEEMTFDGNIFSNMCNLRYLKIY 631


>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
            very low similarity to SP|Q40863 Late embryogenesis
            abundant protein EMB8 from Picea glauca; contains Pfam
            profile PF02517 CAAX amino terminal protease family
            protein
          Length = 1805

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 215  PAAKVTKIRR*SLMRAVAYCVPASVFLFYVINTSIL 108
            PA KV K+R  +++RA+A  V  + FL  V+   ++
Sbjct: 1286 PAGKVGKLRGDAIIRAIASAVQEAHFLRQVLPIGVV 1321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,251,844
Number of Sequences: 28952
Number of extensions: 128498
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)