Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0108
(731 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 66 3e-11
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 64 9e-11
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 63 2e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 1e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 1e-09
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 60 2e-09
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 59 3e-09
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 59 3e-09
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 59 3e-09
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 59 3e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 58 5e-09
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 58 5e-09
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 58 8e-09
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 58 8e-09
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 58 8e-09
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 58 8e-09
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 57 1e-08
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 56 2e-08
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 56 2e-08
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 56 2e-08
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 56 2e-08
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 55 4e-08
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 55 4e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 6e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 1e-07
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 53 2e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 52 3e-07
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 52 3e-07
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 52 3e-07
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 52 4e-07
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 52 4e-07
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 52 4e-07
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 52 4e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 52 5e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 52 5e-07
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 52 5e-07
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 52 5e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 51 7e-07
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 51 7e-07
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 51 7e-07
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 51 7e-07
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 51 9e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 50 2e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 2e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 50 2e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 2e-06
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 50 2e-06
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 50 2e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 50 2e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 49 3e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 49 3e-06
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 49 4e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 49 4e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 49 4e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 48 5e-06
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 48 6e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 48 6e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 6e-06
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 48 8e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 47 1e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 47 1e-05
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 47 1e-05
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 47 1e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 47 1e-05
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 46 2e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 46 2e-05
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 46 2e-05
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 46 3e-05
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 46 3e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 3e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 45 5e-05
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 45 5e-05
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 45 5e-05
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 45 5e-05
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 45 5e-05
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 45 5e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 45 6e-05
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 45 6e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 6e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 45 6e-05
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 45 6e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 45 6e-05
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 44 8e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 1e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 44 1e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 43 2e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 2e-04
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 43 2e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 43 2e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 42 3e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 42 4e-04
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 42 4e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 42 4e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 42 6e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 42 6e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 6e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 41 7e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 41 7e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 41 0.001
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 41 0.001
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 41 0.001
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 41 0.001
At5g51300.2 68418.m06360 splicing factor-related contains simila... 40 0.001
At5g51300.1 68418.m06359 splicing factor-related contains simila... 40 0.001
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 40 0.001
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.001
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 40 0.001
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 40 0.002
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 40 0.002
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 40 0.002
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 40 0.002
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 40 0.002
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 40 0.002
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 40 0.002
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 40 0.002
At2g47310.1 68415.m05906 flowering time control protein-related ... 39 0.003
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 38 0.005
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 38 0.005
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 38 0.005
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.009
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.009
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 38 0.009
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 38 0.009
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 37 0.012
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 37 0.012
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.012
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 37 0.016
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 37 0.016
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.021
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 36 0.021
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 36 0.021
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 36 0.028
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 36 0.037
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 36 0.037
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.048
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 35 0.064
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 34 0.085
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 34 0.11
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.20
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.26
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 33 0.26
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 33 0.26
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 32 0.34
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 32 0.34
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 32 0.34
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 32 0.45
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.60
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 31 1.0
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.4
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 30 1.4
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 30 1.4
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 2.4
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 29 3.2
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 3.2
At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 / 4-coumaroyl... 29 4.2
At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 / 4-coumaroyl... 29 4.2
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 28 5.6
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 7.3
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/72 (45%), Positives = 45/72 (62%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V G+S T E + FSKYG V ++++D +TGRSRGF FV F E+A A + G
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDG 96
Query: 646 MEIDGRRIRVDY 681
++ GRRIRV+Y
Sbjct: 97 QDLHGRRIRVNY 108
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 64.1 bits (149), Expect = 9e-11
Identities = 33/74 (44%), Positives = 47/74 (63%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + GLS TTEQ ++ FSK G V + Q+V+D + RS+GF FV F ++A+ A E
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 640 TGMEIDGRRIRVDY 681
G +++GR I VDY
Sbjct: 96 NGQQLNGRTIFVDY 109
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC V GL+ T EQ I F+++G V +++ID +TGRS+GF FV F+D + + A +
Sbjct: 45 RCF-VGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAID 103
Query: 634 ECTGMEIDGRRI 669
G E+DGR I
Sbjct: 104 RMNGQELDGRNI 115
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + GLS T + + F+ +G V +V++D +TGRSRGF FV F D A A +E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 640 TGMEIDGRRIRVD 678
G E++GR IRV+
Sbjct: 97 DGKELNGRHIRVN 109
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + GLS T + + F+ +G V +V++D +TGRSRGF FV F D A A +E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 640 TGMEIDGRRIRVD 678
G E++GR IRV+
Sbjct: 97 DGKELNGRHIRVN 109
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P + L V L+ ++E +I F YGP+ +V +V D T + +G+ F+ + D K A
Sbjct: 136 PYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAA 195
Query: 628 KNECTGMEIDGRRIRVD 678
+ G +IDGRR+ VD
Sbjct: 196 YKQADGQKIDGRRVLVD 212
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
+S YTTE+Q+ +FS+ G + K+ + +D T GFCFV F ED + A +G +
Sbjct: 41 VSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTIL 100
Query: 655 DGRRIRVDY 681
D R IRVD+
Sbjct: 101 DDRPIRVDF 109
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V GLS T + + F+ +G V + V+ D +TGRSRGF FV F + A A E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 640 TGMEIDGRRIRVD 678
G E++GR+IRV+
Sbjct: 97 DGKELNGRQIRVN 109
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V GLS T + + F+ +G V + V+ D +TGRSRGF FV F + A A E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 640 TGMEIDGRRIRVD 678
G E++GR+IRV+
Sbjct: 97 DGKELNGRQIRVN 109
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/79 (35%), Positives = 48/79 (60%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V LS YTT+Q + +FS +G + + +++ D++T R +GF F+ F+ +DA+ A
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 640 TGMEIDGRRIRVDYP*HSE 696
G +DGR I V+ ++E
Sbjct: 69 DGKIVDGRLIFVEVAKNAE 87
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +1
Query: 445 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
+PS L + GLS EQ + FS +G V +V++ D +GRSRGF FV F + DA
Sbjct: 38 SPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALS 97
Query: 625 AKNECTGMEIDGRRIRVDY 681
AK+ G + GR +R+ +
Sbjct: 98 AKDAMDGKGLLGRPLRISF 116
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/76 (35%), Positives = 45/76 (59%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC+ V + TE+Q+ I + GPV ++V D +TG+ +G+ F ++D E A A+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 634 ECTGMEIDGRRIRVDY 681
EI+GR++RVD+
Sbjct: 69 NLQSYEINGRQLRVDF 84
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + G++ E + F+KYG V +V++D +TGRSRGF FV F E A A
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 640 TGMEIDGRRIRVDY 681
G ++ GR ++V+Y
Sbjct: 102 DGRDLHGRVVKVNY 115
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC V GL+ T ++ + FS++G V +++ D ++GRSRGF FV F+D + + A
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 634 ECTGMEIDGRRIRVD 678
E G E+DGR I V+
Sbjct: 66 EMNGKELDGRVITVN 80
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC V GL+ T ++ + FS++G V +++ D ++GRSRGF FV F+D + + A
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 634 ECTGMEIDGRRIRVD 678
E G E+DGR I V+
Sbjct: 66 EMNGKELDGRVITVN 80
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC V GL+ T ++ + FS++G V +++ D ++GRSRGF FV F+D + + A
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 634 ECTGMEIDGRRIRVD 678
E G E+DGR I V+
Sbjct: 66 EMNGKELDGRVITVN 80
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/75 (38%), Positives = 46/75 (61%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC + GL+ T+++ + F KYG + + +VV+D +GRSRGF F+ F++ + A
Sbjct: 8 RCF-IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 634 ECTGMEIDGRRIRVD 678
GM++DGR I VD
Sbjct: 67 AMNGMDLDGRTITVD 81
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +1
Query: 445 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK- 621
TPS + V GLS+ +TE+ + I +++GP+ V+V+ + +G SRGF F+ F ++ A+
Sbjct: 295 TPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAART 354
Query: 622 -IAKNECTGMEIDGRRIRVDY 681
+ + E G+ +DGR++ Y
Sbjct: 355 MMDRIEHDGIVLDGRKLMFHY 375
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA--K 621
P+ L V GL E+ + + FSK+ P+ +++V D T SRGF FV+F +EDA
Sbjct: 456 PTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKA 515
Query: 622 IAKNECTGMEIDGRRIRVDY 681
+ T +E +G+ +RV Y
Sbjct: 516 LEATNRTALERNGKILRVAY 535
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
R L V L +E Q+ IF +GPV+ VQ+ +D +TG+ +GF F+ F +E +K A+
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324
Query: 634 ECTG-MEIDGRRIRV 675
G +EI GR I+V
Sbjct: 325 ALNGKLEIAGRTIKV 339
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
R + + + L TE+ + FSK G V V++++D + RS+G ++ F D+ +A
Sbjct: 168 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 225
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC V GL+ T ++ + F++YG V +++ D +TGRSRGF FV F+D + K A
Sbjct: 9 RCF-VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 634 ECTGMEIDGRRIRVD 678
G ++DGR I V+
Sbjct: 68 GMNGQDLDGRSITVN 82
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC V GL+ T ++ + F++YG V +++ D +TGRSRGF FV F+D + K A
Sbjct: 9 RCF-VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 634 ECTGMEIDGRRIRVD 678
G ++DGR I V+
Sbjct: 68 GMNGQDLDGRSITVN 82
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V LS T E + +F +G V +V V ID KTG SRGF FV F EDA+ A N+ G
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 646 MEIDGRRIRVDY 681
D +RV++
Sbjct: 277 YGYDNLILRVEW 288
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/83 (37%), Positives = 47/83 (56%)
Frame = +1
Query: 430 LLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDM 609
LL + + S L V G+S +TE+ + FS+YG V KV V++D R +GF +V F
Sbjct: 13 LLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSK 72
Query: 610 EDAKIAKNECTGMEIDGRRIRVD 678
E+A+ A E +DGR + +D
Sbjct: 73 EEAEKALLELNAQLVDGRVVILD 95
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/73 (39%), Positives = 43/73 (58%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V GLS TT +++ F+ +G + +V+ D +GRS+GF FV + +EDA+ AK E
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 640 TGMEIDGRRIRVD 678
+DG I VD
Sbjct: 96 NAKFLDGWVIFVD 108
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 484 YT-TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDG 660
YT T +++ IF + G V VQ+V D T RSRGF FV +E+AK A +I G
Sbjct: 125 YTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGG 184
Query: 661 RRIRVDYP 684
R ++V++P
Sbjct: 185 RTVKVNFP 192
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
T Q + F V +V+ + TGRSRGF F+ FE E+ + A G+E++GR +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
Query: 670 RVD 678
R++
Sbjct: 291 RLN 293
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V G+ TE + +FS+YG + V ++ D TG+S+GF F+ +ED +A + G
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
Query: 646 MEIDGRRIRVDY 681
+ GR I+VD+
Sbjct: 100 ALVLGRTIKVDH 111
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V L Q+ +F G V+ V+V+ D TGRSRGF FV + + + A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 640 TGMEIDGRRIRVD 678
G E+DGR +RV+
Sbjct: 153 NGYELDGRPLRVN 165
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V LS + + +FS+ G V + +V+ D +GRS+GF FV ++ ++ + A G
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267
Query: 646 MEIDGRRIRV 675
++DGR+IRV
Sbjct: 268 ADLDGRQIRV 277
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/60 (40%), Positives = 39/60 (65%)
Frame = +1
Query: 499 QINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 678
++ +FS++G V + +VV D +TGRSRGF FV D+++ A + G ++GR IRV+
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 436 ENPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDM 609
E P PS +F L+ Q + +F + G V+ +V+ + +T +SRGF FV +
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 610 EDAKIAKNECTGMEIDGRRIRVD 678
++A+ A + +++GR + V+
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVN 224
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/78 (35%), Positives = 40/78 (51%)
Frame = +1
Query: 445 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
+P L V LS Q+ +F G V+ V+V+ D TGRSRGF FV + +
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 625 AKNECTGMEIDGRRIRVD 678
A + G E +GR +RV+
Sbjct: 156 AAQQFNGYEFEGRPLRVN 173
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V LS + + ++F++ G V + +V+ D +GRS+GF FV ++ + A N
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 640 TGMEIDGRRIRV 675
G ++DGR+IRV
Sbjct: 311 NGADLDGRQIRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/78 (35%), Positives = 40/78 (51%)
Frame = +1
Query: 445 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
+P L V LS Q+ +F G V+ V+V+ D TGRSRGF FV + +
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 625 AKNECTGMEIDGRRIRVD 678
A + G E +GR +RV+
Sbjct: 156 AAQQFNGYEFEGRPLRVN 173
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V LS + + ++F++ G V + +V+ D +GRS+GF FV ++ + A N
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 640 TGMEIDGRRIRV 675
G ++DGR+IRV
Sbjct: 319 NGADLDGRQIRV 330
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
LS T+ + FS + +V+ D KTGRSRGF FV F + +DA+ A NE G +
Sbjct: 151 LSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWL 210
Query: 655 DGRRIRVDY 681
R+IR ++
Sbjct: 211 SSRQIRCNW 219
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
LS T+ + FS + +V+ D KTGRSRGF FV F + +DA+ A NE G +
Sbjct: 155 LSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWV 214
Query: 655 DGRRIRVDY 681
R+IR ++
Sbjct: 215 SSRQIRCNW 223
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 448 PSRCLGVFGLSLYT--TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P+ C V+ +++T TE + IF+ GP++ +++ K+ + FV++ D A
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCAS 114
Query: 622 IAKNECTGMEIDGRRIRVDY 681
+A G I G+ ++V++
Sbjct: 115 MAIMTLNGRHIFGQPMKVNW 134
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/69 (40%), Positives = 40/69 (57%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
LS T+ + FS Y +V+ D KTGRSRGF FV F + +DA+ A +E TG +
Sbjct: 146 LSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWL 205
Query: 655 DGRRIRVDY 681
R+IR ++
Sbjct: 206 GSRQIRCNW 214
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V ++ TT + +F+KYG V V + D +TG SRGF FV ++ ++A A G
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
Query: 646 MEIDGRRIRVDY 681
+DGR I V +
Sbjct: 80 RVVDGREITVQF 91
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V ++ TT + +F+KYG V V + D +TG SRGF FV ++ ++A A G
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
Query: 646 MEIDGRRIRVDY 681
+DGR I V +
Sbjct: 80 RVVDGREITVQF 91
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
T +Q+ + ++G V+KVQV+ D +GRSR F F + +EDA + G ++GR I
Sbjct: 88 TNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREI 147
Query: 670 RVD 678
+V+
Sbjct: 148 KVN 150
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P L V LS +TTE + + SKYG + +++V TG SRG+ FV +E ++ A
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
Query: 628 KNECTGMEIDGRRIRVDY 681
+ IDGR I VDY
Sbjct: 122 YEDAHHSLIDGREIIVDY 139
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GLS TE+Q+ F +YG + + Q+++ TGR RGF F+ F D A A G
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHG 75
Query: 646 MEIDGRRIRVD 678
E+ + I V+
Sbjct: 76 RELGNKVISVN 86
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GLS TE+Q+ F +YG + + Q+++ TGR RGF F+ F D A A G
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHG 75
Query: 646 MEIDGRRIRVD 678
E+ + I V+
Sbjct: 76 RELGNKVISVN 86
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 433 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFVYFEDM 609
LEN P + V LS ++ ++ FS KY V +VV+DA TGRS+G+ FV F D
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Query: 610 EDAKIAKNECTGMEIDGRRIRV 675
+ A E G++ R +R+
Sbjct: 250 NERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 433 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFVYFEDM 609
LEN P + V LS ++ ++ FS KY V +VV+DA TGRS+G+ FV F D
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Query: 610 EDAKIAKNECTGMEIDGRRIRV 675
+ A E G++ R +R+
Sbjct: 250 NERTKAMTEMNGVKCSSRAMRI 271
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/79 (32%), Positives = 45/79 (56%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P ++ L + GLS YT+E+ + F +G + +V++++D + RS+G+ F+ + E A
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337
Query: 622 IAKNECTGMEIDGRRIRVD 678
A E G I+G I VD
Sbjct: 338 TALKEMNGKIINGWMIVVD 356
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 418 DRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 594
+ VRL ++ R L + GL+ TT + + +FS YG +++ V++D TG+S+G+ FV
Sbjct: 62 ESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFV 121
Query: 595 YFEDMEDAKIAKNECTGMEIDGR 663
F ++ A +A E +IDGR
Sbjct: 122 TFMHVDGALLALKE-PSKKIDGR 143
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
++ +NH F YG V++ + D TG+SRGF ++ E A+ A + + IDG+ +
Sbjct: 181 DRLLNH-FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKV-IDGKHL 237
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 418 DRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 594
+ VRL ++ R L + GL+ TT + + +FS YG +++ V++D TG+S+G+ FV
Sbjct: 62 ESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFV 121
Query: 595 YFEDMEDAKIAKNECTGMEIDGR 663
F ++ A +A E +IDGR
Sbjct: 122 TFMHVDGALLALKE-PSKKIDGR 143
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
++ +NH F YG V++ + D TG+SRGF ++ E A+ A + + IDG+ +
Sbjct: 181 DRLLNH-FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKV-IDGKHL 237
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 51.2 bits (117), Expect = 7e-07
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P L V L+ T ++ ++ IFS++G V V+ D KTG S + F+ FE+ E + A
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQA 300
Query: 628 KNECTGMEIDGRRIRVDY 681
+ ID RRI VD+
Sbjct: 301 YFKMDNALIDDRRIHVDF 318
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 50.8 bits (116), Expect = 9e-07
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P+ L V G S +E ++ +FS++G V V+++ + +T +S G+ +V+F EDA+
Sbjct: 73 PSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQ 132
Query: 622 IAKNECTGMEIDGRRIRVDY 681
A G DGR I V +
Sbjct: 133 SAVEAMNGKFFDGRFILVKF 152
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V LS TT+ + FS YG V V+ D T RSRGF FV + +A+ A + G
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66
Query: 646 MEIDGRRIRV 675
E++GRR+ V
Sbjct: 67 KELNGRRVSV 76
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/79 (35%), Positives = 39/79 (49%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P L V LS T + + F + G V +VV D TGRSRG+ FV + + +
Sbjct: 173 PETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 622 IAKNECTGMEIDGRRIRVD 678
A G E++GR IRV+
Sbjct: 233 TALESLDGFELEGRAIRVN 251
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 430 LLENPTPSRCLGVFGLSLYTTEQQ-INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
+L+ P FG Y + + I + + V+V+ + TG+SRGF FV +
Sbjct: 76 VLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSN 135
Query: 607 MEDAKIAKNECTGMEIDGRRIRVDY 681
+ED I + G E GR ++V++
Sbjct: 136 VEDCNIIIDNLDGTEYLGRALKVNF 160
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 433 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFVYFEDM 609
LEN P + V L+ ++ ++ FS KY V +VV+DA TGRS+G+ FV F D
Sbjct: 192 LENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 251
Query: 610 EDAKIAKNECTGMEIDGRRIRV 675
+ A E G++ R +R+
Sbjct: 252 NERTKAMTEMNGVKCSSRAMRI 273
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/89 (32%), Positives = 49/89 (55%)
Frame = +1
Query: 412 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 591
+ R RL+ T + C+ GLS YTT+Q + +F+ + +++ D +T R +GF F
Sbjct: 58 ISKRRRLIGGKTLT-CVSNSGLSAYTTDQSLRQLFAPFA-----RLIKDQQTQRPKGFGF 111
Query: 592 VYFEDMEDAKIAKNECTGMEIDGRRIRVD 678
+ FE +DA+ A G ++GR I V+
Sbjct: 112 ITFESEDDAQKALKALNGKIVNGRLIFVE 140
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +1
Query: 424 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 603
V + R + V+GL TT + + +F YG +++ VVID TG+++GF FV F+
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Query: 604 DMEDAKIAKNE 636
+ AK A E
Sbjct: 154 TRKGAKEALKE 164
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +1
Query: 424 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 603
V + R + V+GL TT + + +F YG +++ VVID TG+++GF FV F+
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Query: 604 DMEDAKIAKNE 636
+ AK A E
Sbjct: 154 TRKGAKEALKE 164
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
+R L V L + +E + +F +G V+ VQV D +TG +GF FV F +EDA+ A
Sbjct: 284 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL 342
Query: 631 NECTGMEIDGRRIRV 675
N +EI GR I+V
Sbjct: 343 NLNGQLEIAGRAIKV 357
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
R + + ++L TE+ + FS+ G V V++++D + RSRG +V F D +A
Sbjct: 182 RTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 239
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/72 (38%), Positives = 37/72 (51%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V LS T + +F +G V + V ID KT SRGF FV F EDA+ A N+ G
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 646 MEIDGRRIRVDY 681
D +RV++
Sbjct: 238 YGYDNLILRVEW 249
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +1
Query: 445 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
TPS+ V GLS T + + F +G + VV+D ++G SRGF FV ++ +E A
Sbjct: 34 TPSKIF-VGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANN 92
Query: 625 AKNECTGMEIDGRRIRV 675
A E+DGR I V
Sbjct: 93 AMQAMQNKELDGRIIGV 109
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
SR + V L E+++ +FSKYGPV ++ + + R G+ FV F+D DA+ A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAI 62
Query: 631 NECTGMEIDGRRIRVD 678
+ G + DG R+RV+
Sbjct: 63 HGRDGYDFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
SR + V L E+++ +FSKYGPV ++ + + R G+ FV F+D DA+ A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAI 62
Query: 631 NECTGMEIDGRRIRVD 678
+ G + DG R+RV+
Sbjct: 63 HGRDGYDFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
SR + V L E+++ +FSKYGPV ++ + + R G+ FV F+D DA+ A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAI 62
Query: 631 NECTGMEIDGRRIRVD 678
+ G + DG R+RV+
Sbjct: 63 HGRDGYDFDGHRLRVE 78
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1
Query: 499 QINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 678
++ +FS++G V +VV D +TGRSRGF FV + + +A G ++GR I+V+
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/87 (31%), Positives = 45/87 (51%)
Frame = +1
Query: 418 DRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVY 597
D V E P ++ L V L Q + +F + G V+ +V+ + T +SRGF FV
Sbjct: 102 DGVGFPEPPEEAK-LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVT 160
Query: 598 FEDMEDAKIAKNECTGMEIDGRRIRVD 678
+E+A+ A + E++GRR+ V+
Sbjct: 161 MSTVEEAEKAVEKFNSFEVNGRRLTVN 187
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P +R L V L T +++ IF KYG + ++++ D T +G FV +ED+ DAK
Sbjct: 15 PEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYDAK 71
Query: 622 IAKNECTGMEIDGRRIRVDYP*HSELT 702
A + +G + R + V Y H++++
Sbjct: 72 NAVDHLSGFNVANRYLIVLYYQHAKMS 98
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T + + F +YG + + V+ D TGRS+G+ FV F D E A+ A + T
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTP 87
Query: 646 MEIDGRR 666
+ IDGRR
Sbjct: 88 I-IDGRR 93
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P L V GLS TTE + F ++G + + +V+D R +GF F+ +E E+A A
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
Query: 628 KNECTGMEIDGRRIRVD 678
G +DGR I V+
Sbjct: 135 IQGMHGKFLDGRVIFVE 151
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T + + F +YG + + V+ D TGRS+G+ FV F D E A+ A + T
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTP 87
Query: 646 MEIDGRR 666
+ IDGRR
Sbjct: 88 I-IDGRR 93
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/78 (35%), Positives = 41/78 (52%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
PS L V GLS TT + + F+++G V +VV D +G S+GF FV + +ED+
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKG 113
Query: 628 KNECTGMEIDGRRIRVDY 681
G +DG I +Y
Sbjct: 114 IAGMDGKFLDGWVIFAEY 131
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 544 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 681
+V+ D KTGRSRGF FV F + +DA+ A NE G + R+IR ++
Sbjct: 182 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNW 227
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 448 PSRCLGVFGLSLYT--TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P+ C V+ +++T TE + IF+ GP++ +++ K+ + FV++ D A
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCAS 114
Query: 622 IAKNECTGMEIDGRRIRVDY 681
+A G I G+ ++V++
Sbjct: 115 MAIMTLNGRHIFGQPMKVNW 134
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GLS T++ + FS++G + Q++++ TGRSRGF F+ F D + E G
Sbjct: 11 VGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHG 70
Query: 646 MEIDGRRIRVD 678
+ R I V+
Sbjct: 71 RDFGDRVISVN 81
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/76 (36%), Positives = 40/76 (52%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
SR + V L E+++ +FSKYGPV ++ + I R G+ FV FED DA A
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAI 62
Query: 631 NECTGMEIDGRRIRVD 678
G + DG +RV+
Sbjct: 63 YGRDGYDFDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/76 (36%), Positives = 40/76 (52%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
SR + V L E+++ +FSKYGPV ++ + I R G+ FV FED DA A
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAI 62
Query: 631 NECTGMEIDGRRIRVD 678
G + DG +RV+
Sbjct: 63 YGRDGYDFDGHHLRVE 78
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.8 bits (106), Expect = 1e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 427 RLLENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFVYFE 603
R +EN P + V LS T+ ++ FS +Y V +VVID+ TGRS+G+ FV F
Sbjct: 194 RAVENG-PDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Query: 604 DMEDAKIAKNECTGMEIDGRRIRV 675
D + A E G R++RV
Sbjct: 253 DENERSRALTEMNGAYCSNRQMRV 276
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + G+S T E+++ FS +G V + ++ D TGR+RGF FV F D A+I E
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE- 66
Query: 640 TGMEIDGRRI 669
IDGR +
Sbjct: 67 -KHNIDGRLV 75
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + G+S T E+++ FS +G V + ++ D TGR+RGF FV F D A+I E
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE- 66
Query: 640 TGMEIDGRRI 669
IDGR +
Sbjct: 67 -KHNIDGRLV 75
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + GLS T E + FS + V + +V+ + TGRSRG+ FV F + A A +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 640 TGMEIDGRRIRVD 678
G E++G I V+
Sbjct: 93 NGQELNGFNISVN 105
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
RC V GL+ T ++ + FS++G V +++ D ++GRSRGF FV F+D + + A
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 634 ECTG 645
E G
Sbjct: 66 EMNG 69
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
S L V L+ TTE + +F +YG +D++ V SRGF F+Y+ +E+A AK
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAAK 70
Query: 631 NECTGMEIDG 660
G ++G
Sbjct: 71 EALQGANLNG 80
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/74 (37%), Positives = 39/74 (52%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V L T+ Q+ F++ G V V+V D T RS G+ +V + +DA A NE
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 640 TGMEIDGRRIRVDY 681
M ++GR IRV Y
Sbjct: 107 NFMALNGRAIRVMY 120
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V LS +++++N +F ++G ++ D + G+S+GF FV FE+ +DA A + G
Sbjct: 228 VKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNG 286
Query: 646 MEIDGR 663
D +
Sbjct: 287 KTFDDK 292
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/70 (37%), Positives = 37/70 (52%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL T+++ F YGPV V ++ D T R RGF FV F D EDA + T
Sbjct: 114 VGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLHKTF 172
Query: 646 MEIDGRRIRV 675
++ G+++ V
Sbjct: 173 HDLSGKQVEV 182
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
L V G+S T E ++ F+ YG V + V+ D TGR RGF FV F D
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V LS E ++ IF YG + +V+ + GRS+GF FV F + E++K AK
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 640 TGMEIDGRRIRV 675
G +DG+ I V
Sbjct: 365 NGFLVDGKPIVV 376
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
T+ ++ +FS+YG V V V+ D GRSRGF FV F + E+AK A G+++ +++
Sbjct: 214 TDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
Query: 670 RV 675
V
Sbjct: 273 FV 274
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/85 (32%), Positives = 39/85 (45%)
Frame = +1
Query: 436 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 615
++P + + V GL T Q+ FS+ GPV + +V + + RGF FV F ED
Sbjct: 14 KSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQED 73
Query: 616 AKIAKNECTGMEIDGRRIRVDYP*H 690
A G + GRRI V H
Sbjct: 74 VNRAIELKNGSTVGGRRITVKQAAH 98
Score = 31.1 bits (67), Expect = 0.79
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 502 INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 681
I +FS G V V + + +TG +GF FV F +DA A + G R I VD+
Sbjct: 347 IKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDW 406
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSK-YGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
P + V L+ T+ ++ F YG V +VV+D TGRS+G+ FV F D +
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMR 211
Query: 625 AKNECTGMEIDGRRIRVDYP*HSELTLPLRASTWE 729
A E G R +R+ P ++ LP++ + ++
Sbjct: 212 AMTEMNGQYCSTRPMRIG-PAANKNALPMQPAMYQ 245
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = +1
Query: 433 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 612
L+N +G Y TE I FS++G V +V+V + KTG+S+ F F+ FED E
Sbjct: 55 LQNKATVLYIGRIPHGFYETE--IEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPE 112
Query: 613 DAKIA 627
A+IA
Sbjct: 113 VAEIA 117
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 487 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 666
+T + I +F KYG V +++ + K R+RG F+ E+A A E +GRR
Sbjct: 105 STPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALKSLESCEYEGRR 163
Query: 667 IRVDY 681
++VDY
Sbjct: 164 LKVDY 168
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF--EDMEDAKIAKNEC 639
V G+ TE ++ F+KYG V + QV+ D +T RSRGF FV F E++ D ++K
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNM 172
Query: 640 TGM 648
M
Sbjct: 173 IDM 175
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 472 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
GL TT N F KYG + ++ D TG+ RGF F+ F D
Sbjct: 25 GLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD 69
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF--EDMEDAKIAKNEC 639
V G+ TE ++ F+KYG V + QV+ D +T RSRGF FV F E++ D ++K
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNM 172
Query: 640 TGM 648
M
Sbjct: 173 IDM 175
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 472 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
GL TT N F KYG + ++ D TG+ RGF F+ F D
Sbjct: 25 GLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD 69
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL Y TE QI + +GP+ +V D +TG S+G+ F ++D IA G
Sbjct: 379 VGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNG 438
Query: 646 MEIDGRRIRV 675
+++ + + V
Sbjct: 439 IKMGDKTLTV 448
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 448 PSRC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
PS+ L V L T I+ +FS +G V +V V+ D T +SRG FV + EDA
Sbjct: 54 PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAK 113
Query: 625 AKNECTGMEIDGRRIRV 675
A ++GR++ V
Sbjct: 114 AARSMDAKILNGRKLTV 130
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +1
Query: 439 NPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 612
N T ++ +F GL+ T + F ++G + + V+ D TGRS+G+ FV F +
Sbjct: 15 NTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTF---K 71
Query: 613 DAKIAKNECTGME--IDGRR 666
+A+ A C M IDGRR
Sbjct: 72 EAEAAMRACQNMNPVIDGRR 91
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = +1
Query: 436 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 615
+N R L VF L + I+ +F + G V+ V++ I K G++RGF FV E+
Sbjct: 89 QNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI-IRQKDGKNRGFAFVTMASGEE 147
Query: 616 AKIAKNECTGMEIDGRRIRVDY 681
A+ A ++ ++ GR I V +
Sbjct: 148 AQAAIDKFDTFQVSGRIISVSF 169
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +1
Query: 436 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 615
+ + R + V GL TT + + F YG + + VV+D TGR++GF FV F+ +
Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKG 216
Query: 616 AKIA 627
A+ A
Sbjct: 217 ARAA 220
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/77 (35%), Positives = 37/77 (48%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P L V GLS TE+ + F+K G V V +V+D T SRGF F+ + + DA
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 102
Query: 628 KNECTGMEIDGRRIRVD 678
+ GR I V+
Sbjct: 103 IRSLDHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/77 (35%), Positives = 37/77 (48%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P L V GLS TE+ + F+K G V V +V+D T SRGF F+ + + DA
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 628 KNECTGMEIDGRRIRVD 678
+ GR I V+
Sbjct: 133 IRSLDHSVLQGRVITVE 149
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V L +TT+ ++ KYG V +V+ + +G+S+G+C V F D A K+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 640 TGMEIDGRRIRVDY 681
G +GR V+Y
Sbjct: 296 NGYPFNGRPCVVEY 309
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL Y TE Q+ + +G + +V D +TG S+G+ F ++D+ IA G
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
Query: 646 MEIDGRRIRV 675
+++ + + V
Sbjct: 423 IKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL Y TE Q+ + +G + +V D +TG S+G+ F ++D+ IA G
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
Query: 646 MEIDGRRIRV 675
+++ + + V
Sbjct: 423 IKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL Y TE Q+ + +G + +V D +TG S+G+ F ++D+ IA G
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
Query: 646 MEIDGRRIRV 675
+++ + + V
Sbjct: 423 IKMGDKTLTV 432
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P+ L V G S +E ++ +FS++G V V+++ + +T +S G+ +V+F EDA+
Sbjct: 54 PSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQ 113
Query: 622 IAKNECTG 645
A G
Sbjct: 114 SAVEAMNG 121
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 439 NPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 612
N SR +F GLS TTE++ F ++G V V+ D T R RGF FV + D E
Sbjct: 113 NGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSE 171
Query: 613 DAKIAKNECTGMEIDGRRIRV 675
D+ + E+ +R+ V
Sbjct: 172 DSVEVVMQSNFHELSDKRVEV 192
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 600
L V G++ T+E+ + FS+YG V + V + TG+ RGF FV F
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T ++ + F ++G + + V+ D +GRS+G+ FV F + E A+ A + T
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATP 76
Query: 646 MEIDGRR 666
+ IDGRR
Sbjct: 77 V-IDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T ++ + F ++G + + V+ D +GRS+G+ FV F + E A+ A + T
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATP 76
Query: 646 MEIDGRR 666
+ IDGRR
Sbjct: 77 V-IDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T ++ + F ++G + + V+ D +GRS+G+ FV F + E A+ A + T
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATP 76
Query: 646 MEIDGRR 666
+ IDGRR
Sbjct: 77 V-IDGRR 82
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
L + G+S T E+++ FS YG V + ++ D TGR+RGF F+ F D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL TE++ + F ++G + V V+ D T R RGF F+ F D +DA T
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTF 172
Query: 646 MEIDGRRIRV 675
E++G+ + V
Sbjct: 173 HELNGKLVEV 182
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
L + G+S T E+++ FS YG V + ++ D TGR+RGF F+ F D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL TE++ + F ++G + V V+ D T R RGF F+ F D +DA T
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTF 172
Query: 646 MEIDGRRIRV 675
E++G+ + V
Sbjct: 173 HELNGKLVEV 182
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
L + G+S T E+++ FS YG V + ++ D TGR+RGF F+ F D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL TE++ + F ++G + V V+ D T R RGF F+ F D +DA T
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTF 172
Query: 646 MEIDGRRIRV 675
E++G+ + V
Sbjct: 173 HELNGKLVEV 182
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +1
Query: 421 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 600
+ L P S+ + V L T+E + FS +G + +V+++ D RS+G+ F+ F
Sbjct: 30 KASLFNYPLASKIM-VRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQF 88
Query: 601 EDMEDAKIAKNECTGMEIDGRRIRVD 678
+DA +A +GR I +D
Sbjct: 89 TSQDDAFLAIETMDRRMYNGRMIYID 114
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 672
++ + F ++GPV + + D TG RGF F+ F D DA AK++ G + GR +
Sbjct: 50 QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELT 109
Query: 673 V 675
V
Sbjct: 110 V 110
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
R + V G TT++ + F YG +++ VV+D TGR +G+ FV F+ + A+ A
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 499 QINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 678
Q+ +F +G V V+V + +TG SRG +V + AKIA G E+ GR +RV
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 679 Y 681
Y
Sbjct: 183 Y 183
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V L +T + + FSK+G + +V+ D KTGR+R F F+ F E+ A + G
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNG 274
Query: 646 MEIDGRRIRV 675
+ +GRRI V
Sbjct: 275 TQYEGRRIIV 284
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +1
Query: 439 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 618
N T + V L+ TT+ + + F +YG + V+ D + G+S+GF FV FE+ +DA
Sbjct: 24 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDA 82
Query: 619 KIAKNECTGMEIDGR 663
A G + D +
Sbjct: 83 ARAVESLNGHKFDDK 97
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
L + G+S T E+++ F KYG + + ++ D TGR+RGF F+ F D
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFAD 65
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 672
++ + F ++GPV + + D TG RGF FV F D DA AK+ G + GR +
Sbjct: 49 QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 108
Query: 673 V 675
V
Sbjct: 109 V 109
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 421 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 600
R + N ++ + V G+ + + F ++G + + Q++ D TGRSRGF FV +
Sbjct: 119 RGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 178
Query: 601 --EDMEDAKIAKNECTGMEIDGRRIRV 675
EDM D +AK +E+ G ++ +
Sbjct: 179 ESEDMVDHLLAKG--NRIELSGTQVEI 203
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
V GL+ TT + F KYG + ++ D KTG+ RGF FV + D
Sbjct: 46 VGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V L TE+++ FS +G + +V +V+D +T RSRG ++ + E A A E
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322
Query: 640 TGMEIDGRRIRV 675
GR + +
Sbjct: 323 DNSSFQGRLLHI 334
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +1
Query: 412 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFS---KYGPVDKVQVVIDAKTGR--S 576
L +V + + T S L V LS TT++ + F+ K G + V ++ K + S
Sbjct: 555 LEQQVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLS 614
Query: 577 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
G+ FV F+ +E A + G +DG +
Sbjct: 615 SGYGFVEFDSVETATSVYRDLQGTVLDGHAL 645
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
V GL T E+ + IFSK+G V +++ D TG+SR F FV FE+
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V GL+ E ++ F +G + V+ +D + R F FV F + EDA A +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 640 TGMEIDGRRIRVDY 681
G E+ GR + V+Y
Sbjct: 75 DGAELYGRVLTVNY 88
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL TE+ + +FS YG V V++V D ++ R + + FV F + A A + G
Sbjct: 11 VGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDMDG 69
Query: 646 MEIDGRRIRVD 678
I GR +RV+
Sbjct: 70 KSIGGRAVRVN 80
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/70 (35%), Positives = 35/70 (50%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL T + F YGPV ++ID T R RGF FV F D ED+ T
Sbjct: 114 VGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSVDLVLHKTF 172
Query: 646 MEIDGRRIRV 675
+++G+++ V
Sbjct: 173 HDLNGKQVEV 182
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
L + G+S T E + FS +G V +V V+ + TGR RGF FV F D
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +1
Query: 415 GDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 594
GD+ ++ + +R + V GL E ++ + F YG + + Q++ D TGRSRGF FV
Sbjct: 144 GDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFV 203
Query: 595 YFE 603
F+
Sbjct: 204 TFQ 206
Score = 36.7 bits (81), Expect = 0.016
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V G+S TT + + F K+G V ++ D TG RGF FV F D A+ E
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE- 126
Query: 640 TGMEIDGRRI 669
ID R++
Sbjct: 127 -DHVIDDRKV 135
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
L +TT+ +I + S+YG V +++ + +G+S+G+C V F D A K G
Sbjct: 209 LHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIF 268
Query: 655 DGR 663
+G+
Sbjct: 269 NGK 271
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/72 (37%), Positives = 34/72 (47%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
R L V G+ + SK+G ++ V+ D TGRSRGF +V F ED AKN
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAED---AKN 59
Query: 634 ECTGMEIDGRRI 669
G G RI
Sbjct: 60 ALKGEHFLGNRI 71
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/81 (32%), Positives = 39/81 (48%)
Frame = +1
Query: 421 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 600
R R E P L V GLS T++ + F+K G V +V++ +T SRGF FV
Sbjct: 60 RSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTM 119
Query: 601 EDMEDAKIAKNECTGMEIDGR 663
++DA+ ++GR
Sbjct: 120 SSLKDAERCIKYLNQSVLEGR 140
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 520 KYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 675
+Y V +VVID+ TGRS+G+ FV F D + A E G R++RV
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRV 287
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 496 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 675
+++ F ++GPV V + D +G+ RGF FV F D DA A+ GR I V
Sbjct: 61 EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V LS TT+ ++ F +YG + V+ D G+SR F FV FE+ EDA A G
Sbjct: 229 VKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNG 287
Query: 646 MEIDGR 663
+ D +
Sbjct: 288 KKFDDK 293
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V L T+ Q+ F++ V V+V DA T S G+ +V + + +DA+ A +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 640 TGMEIDGRRIRVDY 681
++G+ IR+ Y
Sbjct: 108 NYSYLNGKMIRITY 121
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +1
Query: 436 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 615
E P L V GLS T++ + F+K G V +V++ +T SRGF FV ++D
Sbjct: 66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 125
Query: 616 AKIAKNECTGMEIDGR 663
A+ ++GR
Sbjct: 126 AERCIKYLNQSVLEGR 141
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T + + + F ++G + + V+ D +GRS+G+ FV F D E A+ A +
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAP 70
Query: 646 MEIDGRR 666
+ IDGRR
Sbjct: 71 V-IDGRR 76
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T + + + F ++G + + V+ D +GRS+G+ FV F D E A+ A +
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAP 70
Query: 646 MEIDGRR 666
+ IDGRR
Sbjct: 71 V-IDGRR 76
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T ++ F ++G + + ++ D TG+S+G+ FV F D + A A +
Sbjct: 21 VGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNP 80
Query: 646 MEIDGRR 666
+ IDGR+
Sbjct: 81 V-IDGRK 86
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 508 HIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 675
++FS +G + +V+ D TG S+G+ FV + D++ A A G +GR + V
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 508 HIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 675
++FS +G + +V+ D TG S+G+ FV + D++ A A G +GR + V
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
SR + V L E +I IF KYG + +++ + R +CFV FE DA+ A
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFEHSRDAEDAI 62
Query: 631 NECTGMEIDGRRIRVD 678
G +DG R+RV+
Sbjct: 63 KGRDGYNLDGCRLRVE 78
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +1
Query: 514 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 681
FS +G + +V +D TGRS+G+ FV FE E A+ A ++ GM ++ +++ V +
Sbjct: 156 FSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGH 210
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 499 QINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 678
++ +F KYGP+ + + I R G+ FV FED DA A G + DG R+RV+
Sbjct: 22 EVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVE 78
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
L + G+S T+E ++ F +G V + ++ D TGR+RGF FV F D
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFAD 56
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
L + G+S T+E ++ F +G V + ++ D TGR+RGF FV F D
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFAD 56
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 496 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 636
Q++ FSK+G +++ + +D TGR +GFC ++ E AK A E
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 412 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFC 588
+ +R+R + + P R + V GL T + + F +YG ++ + V D +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 589 FVYFEDMEDAKIA 627
F+ ++ A+ A
Sbjct: 185 FILYKSRSGARNA 197
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 496 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 636
Q++ FSK+G +++ + +D TGR +GFC ++ E AK A E
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 412 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFC 588
+ +R+R + + P R + V GL T + + F +YG ++ + V D +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 589 FVYFEDMEDAKIA 627
F+ ++ A+ A
Sbjct: 185 FILYKSRSGARNA 197
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 496 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 636
Q++ FSK+G +++ + +D TGR +GFC ++ E AK A E
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 412 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFC 588
+ +R+R + + P R + V GL T + + F +YG ++ + V D +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 589 FVYFEDMEDAKIA 627
F+ ++ A+ A
Sbjct: 185 FILYKSRSGARNA 197
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T ++ + F KYG + + ++ D T RS+G+ FV F+D + A A + T
Sbjct: 21 VGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTP 80
Query: 646 MEIDGRR 666
+ I+GRR
Sbjct: 81 I-INGRR 86
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T ++ F ++G + + ++ D TG+S+G+ FV F + + A A +
Sbjct: 21 VGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNP 80
Query: 646 MEIDGRR 666
+ IDGR+
Sbjct: 81 V-IDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL+ T ++ F ++G + + ++ D TG+S+G+ FV F + + A A +
Sbjct: 21 VGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNP 80
Query: 646 MEIDGRR 666
+ IDGR+
Sbjct: 81 V-IDGRK 86
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
L V +S TE I +F KYG V ++ + D TG +CF+ ++ +E+ A
Sbjct: 112 LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAA 167
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +1
Query: 424 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 603
V+L +NP L V L+ TT+ ++N +FS+YG ++ + + +D RG+ FV F
Sbjct: 201 VQLPDNPK----LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFS 255
Query: 604 DMEDAKIAKNECTGM 648
E A A G+
Sbjct: 256 CKEMALAAIKALNGL 270
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 618
TE++I F ++G V +V ++ D +TG+ +G CFV + +DA
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 618
TE++I F ++G V +V ++ D +TG+ +G CFV + +DA
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 412 LGDRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFC 588
+ +R+R++ + R + V GL T + F +YG ++ + V+D +G+S+G+
Sbjct: 113 VANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYG 172
Query: 589 FVYFEDMEDAKIA 627
F+ F+ A+ A
Sbjct: 173 FILFKSRSGARNA 185
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
R + V +S Q++ FS++G +++ + +D TGR +GF + +E AK A
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 634 E 636
E
Sbjct: 287 E 287
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 484 YTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
+ +E Q+ +F ++ VD+V ++ D T SRG CF+ E+A N C
Sbjct: 28 HMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
+E ++ +FSKYG + +Q++ A+ S+G F+ +E E A A G
Sbjct: 118 SEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMESING 168
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 484 YTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
+ +E Q+ +F ++ VD+V ++ D T SRG CF+ E+A N C
Sbjct: 28 HMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
+E ++ +FSKYG + +Q++ A+ S+G F+ +E E A A G
Sbjct: 118 SEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMESING 168
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 672
++++ FSK G V +V V D +TG SRGF ++ D+ + +G EI G I
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI---DLTSGFDEALQLSGSEIGGGNIH 552
Query: 673 VD 678
V+
Sbjct: 553 VE 554
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
LS T + + +FS+YG V V + R + FV F D DA A++ G +
Sbjct: 18 LSSRTRTRDLERLFSRYGRVRDVDM--------KRDYAFVEFGDPRDADDARHYLDGRDF 69
Query: 655 DGRRIRVDY 681
DG RI V++
Sbjct: 70 DGSRITVEF 78
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 445 TPSRCLGVFGLSLYTTEQQINHIF-SKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
+P + V L+ T+ + F + Y V +VVID TGR++G+ FV F D +
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Query: 622 IAKNECTGMEIDGRRIRV 675
A E G+ R +R+
Sbjct: 212 RAMTEMNGVPCSTRPMRI 229
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/82 (23%), Positives = 39/82 (47%)
Frame = +1
Query: 436 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 615
+N + + V GL T+ + ++FS+YG + V++ + G FV F +
Sbjct: 255 DNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG------FVQFSEKSC 308
Query: 616 AKIAKNECTGMEIDGRRIRVDY 681
A+ A G+++ G +R+ +
Sbjct: 309 AEEALRMLNGVQLGGTTVRLSW 330
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 445 TPSRCLGVFGLSLYTTEQQINHIF-SKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
+P + V L+ T+ + F + Y V +VVID TGR++G+ FV F D +
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Query: 622 IAKNECTGMEIDGRRIRV 675
A E G+ R +R+
Sbjct: 212 RAMTEMNGVPCSTRPMRI 229
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI--DGRR 666
E + +F KYG V++V D K G F FVY ED DA+ A E GRR
Sbjct: 15 ESDLERLFRKYGKVERV----DMKAG----FAFVYMEDERDAEDAIRALDRFEYGRTGRR 66
Query: 667 IRVDY 681
+RV++
Sbjct: 67 LRVEW 71
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTE-QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
PS+ L V T + + F YG + V++ R F F+ +E EDA
Sbjct: 94 PSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRI--------RRNFAFIQYEAQEDATR 145
Query: 625 AKNECTGMEIDGRRIRVDY 681
A + ++ + I V+Y
Sbjct: 146 ALDATNSSKLMDKVISVEY 164
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI--DGRR 666
E + +F KYG V++V D K G F FVY ED DA+ A E GRR
Sbjct: 15 ESDLERLFRKYGKVERV----DMKAG----FAFVYMEDERDAEDAIRALDRFEYGRTGRR 66
Query: 667 IRVDY 681
+RV++
Sbjct: 67 LRVEW 71
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTE-QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
PS+ L V T + + F YG + V++ R F F+ +E EDA
Sbjct: 94 PSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRI--------RRNFAFIQYEAQEDATR 145
Query: 625 AKNECTGMEIDGRRIRVDY 681
A + ++ + I V+Y
Sbjct: 146 ALDATNSSKLMDKVISVEY 164
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = +1
Query: 436 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 615
E+ PS L + L L + F ++GP+ + + + TG RGF FV + ED
Sbjct: 42 ESSGPSGLL-IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAED 100
Query: 616 AKIAKNECTGMEIDGRRIRV 675
A A I GR I +
Sbjct: 101 AAEAMKRMNHKVIGGREIAI 120
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSK-YGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
P + V L+ T+ + F Y V +VV D TGRS+G+ FV F D +
Sbjct: 171 PEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIR 230
Query: 625 AKNECTGMEIDGRRIR 672
A E G R +R
Sbjct: 231 AMTEMNGQYCSSRPMR 246
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 36.7 bits (81), Expect = 0.016
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI--DGRR 666
E + +F KYG V++V D K G F FVY ED DA+ A E GRR
Sbjct: 15 EGDLERLFRKYGKVERV----DMKAG----FAFVYMEDERDAEDAIRALDRFEFGRKGRR 66
Query: 667 IRVDY 681
+RV++
Sbjct: 67 LRVEW 71
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
P + V L+ T+ + F Y V +VV D TGRS+G+ FV F + +
Sbjct: 114 PDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 173
Query: 625 AKNECTGMEIDGRRIRV 675
A E G+ R +R+
Sbjct: 174 AMAEMNGLYCSTRPMRI 190
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 36.3 bits (80), Expect = 0.021
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 487 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK--IAKNECTGMEIDG 660
T + + +F KYG VD+V D K+G + FVYFED DA+ I K + +
Sbjct: 13 TRQSDLERLFDKYGRVDRV----DMKSG----YAFVYFEDERDAEDAIRKLDNFPFGYEK 64
Query: 661 RRIRVDY 681
RR+ V++
Sbjct: 65 RRLSVEW 71
Score = 31.9 bits (69), Expect = 0.45
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +1
Query: 439 NPTPSRCLGVFGLS-LYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 615
N P++ L V + T E I F YG V V++ R F FV FE ED
Sbjct: 88 NLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRI--------RRNFSFVQFETQED 139
Query: 616 AKIAKNECTGMEIDGRRIRVDY 681
A A +I R + V+Y
Sbjct: 140 ATKALEATQRSKILDRVVSVEY 161
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V +++ TE+++ FS+ G + +++ D K G+S+GF FV F E+A A G
Sbjct: 308 VKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHG 366
Query: 646 MEIDGRRIRV 675
G+ + V
Sbjct: 367 QMFHGKPLYV 376
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
TE + F+++ + V++ DA +GRS + + F +DA +A + ++G+ I
Sbjct: 36 TEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMI 95
Query: 670 RV 675
RV
Sbjct: 96 RV 97
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
+E + F+++G + + + D + RG+ FV F++ EDA+ A G + + +
Sbjct: 213 SEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCL 271
Query: 670 RV 675
V
Sbjct: 272 YV 273
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 618
T + +F K+G + +V + G+SRG+ FV FE EDA
Sbjct: 124 TNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFE-QEDA 164
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 35.9 bits (79), Expect = 0.028
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
LS T + + +FS+YG V V + R + FV F D DA A+ G +
Sbjct: 18 LSSRTRTRDLERLFSRYGRVRDVDM--------KRDYAFVEFSDPRDADDARYYLDGRDF 69
Query: 655 DGRRIRVD 678
DG RI V+
Sbjct: 70 DGSRITVE 77
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 436 ENPTPSRCLG---VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
ENP + G V L + ++++ IFS YG + +V+ +T ++ F D
Sbjct: 286 ENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR-----RTMHENSQVYIEFFD 340
Query: 607 MEDAKIAKNECTGMEIDGRRIRV 675
+ AK+A G+E+ GR++++
Sbjct: 341 VRKAKVALQGLNGLEVAGRQLKL 363
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
SR L V + + ++ +F ++G V + G++RGF V + D+ A+ A
Sbjct: 210 SRILFVRNVDSSIEDCELGVLFKQFGDVRALHTA-----GKNRGFIMVSYYDIRAAQKAA 264
Query: 631 NECTGMEIDGRRIRVDY 681
G + GR++ + Y
Sbjct: 265 RALHGRLLRGRKLDIRY 281
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 35.5 bits (78), Expect = 0.037
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V GL +E+ + +F + GPV V V D T + + F+ + EDA A
Sbjct: 29 VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNM 88
Query: 646 MEIDGRRIRVD 678
+++ G+ IRV+
Sbjct: 89 IKLHGKPIRVN 99
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.1 bits (77), Expect = 0.048
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P+ L V L E + +F++ PV ++V D T RS G+ +V F + EDA A
Sbjct: 43 PNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRA 101
Query: 628 KNECTGMEIDGRRIRV 675
I R IR+
Sbjct: 102 MESLNYAPIRDRPIRI 117
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + L + + I +FS+ G + + + D ++GRS+G V F DA A
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 640 TGMEIDGRRIRVD 678
+++DG+ ++++
Sbjct: 169 NNVQLDGKLMKIE 181
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 34.3 bits (75), Expect = 0.085
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V L+ TT + F ++G V VV + GRS+G+ F+ F D A
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKP 75
Query: 646 MEIDGR 663
+ IDGR
Sbjct: 76 I-IDGR 80
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +1
Query: 427 RLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 606
R LE+ + SR + V + T+ ++ F+K+G V K +V D TG+ G ++ F
Sbjct: 508 RPLEDAS-SRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTR 566
Query: 607 MEDAKIA 627
E A+ A
Sbjct: 567 KEAAENA 573
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 487 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK--IAKNECTGMEIDG 660
T + +FSK+G V +V D K+G + FVYFED DA+ I + + T
Sbjct: 13 TRHSDLERLFSKFGRVKRV----DMKSG----YAFVYFEDERDAEDAIRRTDNTTFGYGR 64
Query: 661 RRIRVDY 681
R++ V++
Sbjct: 65 RKLSVEW 71
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 427 RLLENPTPSRCLGVFGLS-LYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 603
+ + N P++ L V + T E+ + F YG V V++ R F FV F
Sbjct: 86 KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRM--------RRNFAFVQFA 137
Query: 604 DMEDAKIAKNECTGMEIDGRRIRVDY 681
EDA A + ++ + + V+Y
Sbjct: 138 TQEDATKALDSTHNSKLLDKVVSVEY 163
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + L + I +F++ G + + V D ++GRS+G V + DA A +
Sbjct: 88 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALAAVKKY 146
Query: 640 TGMEIDGRRIRVD 678
+++DG+ ++++
Sbjct: 147 NDVQLDGKPMKIE 159
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + L + I +F++ G + + V D ++GRS+G V + DA A +
Sbjct: 24 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALAAVKKY 82
Query: 640 TGMEIDGRRIRVD 678
+++DG+ ++++
Sbjct: 83 NDVQLDGKPMKIE 95
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + L + I +F++ G + + V D ++GRS+G V + DA A +
Sbjct: 90 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 640 TGMEIDGRRIRVD 678
+++DG+ ++++
Sbjct: 149 NDVQLDGKPMKIE 161
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +1
Query: 478 SLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEID 657
S + TE+++ +FS+ G + V++ G+SR F ++ F ++A+ A ID
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLK-RKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFID 69
Query: 658 GRRIRVD 678
RI V+
Sbjct: 70 TYRISVE 76
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P L + L +E+ + +FS +G V + + D + G SRGF F+ FE + A
Sbjct: 13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSAG 71
Query: 622 IAKNECTGMEIDGRRI 669
A + +DGR I
Sbjct: 72 RAM-----LHMDGRLI 82
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +1
Query: 433 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 612
L + TP+R L + + TE + YG V VQ+ S G V+F D+
Sbjct: 99 LPSNTPTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQM-----ERISEGIVTVHFYDIR 153
Query: 613 DAKIAKNECTG 645
DAK A E G
Sbjct: 154 DAKRAVREVCG 164
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P +R L + L T + +F +Y + +V++ + T +G FV +ED+ DAK
Sbjct: 16 PEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGT---KGTAFVVYEDIYDAK 72
Query: 622 IA 627
A
Sbjct: 73 KA 74
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P L V L +E ++ +FS+YG + +Q ++ S+G F+ +E E A A
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQ-ILRGSLQTSKGCLFLKYESKEQAVAA 165
Query: 628 KNECTGMEI 654
G I
Sbjct: 166 MEALNGRHI 174
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 484 YTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 618
+ TE Q+ +F ++ V++V ++ + T RG CF+ EDA
Sbjct: 22 HMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDA 66
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
+E ++ +FS+YG + +Q ++ S+G F+ +E E A A G I
Sbjct: 112 SETEVQSLFSEYGTIKDLQ-ILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 165
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 484 YTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 618
+ TE Q+ +F ++ V++V ++ + T RG CF+ EDA
Sbjct: 22 HMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDA 66
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +1
Query: 502 INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 678
+ +F ++GP+ K ++ + + + FV FE+ + AK A + + + +DG V+
Sbjct: 566 VESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRA-IQASPLNVDGHTTYVE 623
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/78 (20%), Positives = 36/78 (46%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
PSR L V ++ + ++ +F +YG + + T + RGF + + D+ A++A
Sbjct: 166 PSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSARMA 220
Query: 628 KNECTGMEIDGRRIRVDY 681
+ R++ + +
Sbjct: 221 MRSLQNKPLRRRKLDIHF 238
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/78 (20%), Positives = 36/78 (46%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
PSR L V ++ + ++ +F +YG + + T + RGF + + D+ A++A
Sbjct: 166 PSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSARMA 220
Query: 628 KNECTGMEIDGRRIRVDY 681
+ R++ + +
Sbjct: 221 MRSLQNKPLRRRKLDIHF 238
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 577 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 678
R + FV F D DA A+ G + DG RI V+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -1
Query: 146 VLERLLSRSDIAMFLVNKRDKSEISRIFSINTLKRSTSIYRRDRT 12
+L R S SDI FL+ KR K EI S L R+ S RT
Sbjct: 160 MLARSRSESDIERFLIEKRRKEEILGKISKQRLTRTYSTICPTRT 204
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/84 (28%), Positives = 35/84 (41%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L + L + + HIF YG V +V+ +T R FV F D+ DA A
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVR-----ETPCKREQRFVEFFDVRDAAKALRVM 239
Query: 640 TGMEIDGRRIRVDYP*HSELTLPL 711
G I G+ + + + LT L
Sbjct: 240 NGKVISGKPMVIQFSRPGGLTKKL 263
>At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 /
4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
Length = 490
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 678 IDADATTVNFHSGAFILCNLSIFHVLKVN 592
+D + + FHS ILC L +FH+ +N
Sbjct: 235 VDGENPNLYFHSDDVILCVLPMFHIYALN 263
>At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 /
4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
Length = 561
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 678 IDADATTVNFHSGAFILCNLSIFHVLKVN 592
+D + + FHS ILC L +FH+ +N
Sbjct: 235 VDGENPNLYFHSDDVILCVLPMFHIYALN 263
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 427 RLLENPTPSRCLGVFGLS-LYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 603
+ + N P++ L V + T E+ + F YG V V++ R F FV F
Sbjct: 60 KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRM--------RRNFAFVQFA 111
Query: 604 DMEDAKIAKNECTGMEIDGRRIRVDY 681
EDA A + ++ + + V+Y
Sbjct: 112 TQEDATKALDSTHNSKLLDKVVSVEY 137
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
TE+++ F +G + V V R G+ F+ FED DA+ A E G
Sbjct: 14 TERELEDEFRSFGVIRSVWVA-----RRPPGYAFLDFEDSRDARDAIREVDG 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,478,020
Number of Sequences: 28952
Number of extensions: 289079
Number of successful extensions: 1006
Number of sequences better than 10.0: 184
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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