Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0101
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g29602.1 68418.m03638 hypothetical protein                          29   1.9  
At4g20940.1 68417.m03034 leucine-rich repeat family protein cont...    29   2.5  
At4g15320.1 68417.m02344 cellulose synthase family protein simil...    28   4.4  

>At5g29602.1 68418.m03638 hypothetical protein
          Length = 139

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 163 AILKKKKSHLCIWKILVIFFYL 98
           A+L+KK+ H CIW + V F +L
Sbjct: 94  ALLRKKELHKCIWCLKVCFVWL 115


>At4g20940.1 68417.m03034 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 977

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 420 GFNFVSCYTIRYNLDSLFSGAVPINLFKLNKLTLTIL 310
           GFN+V    +    ++ FSG++P NL K + L LT L
Sbjct: 289 GFNYVYDLEVLKLSNNRFSGSLPNNLLKGDSLLLTTL 325


>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 82  HCLYISNKKK*LIFSKYISGSFFF*VWQFYFLHLLIKEKITY*K 213
           H +YIS +K+      Y +G+  F V  FY  HL   + + Y K
Sbjct: 296 HLVYISREKRPNYLHHYKTGAMNFLVNDFYLTHLSFFDILIYLK 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,354
Number of Sequences: 28952
Number of extensions: 189130
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)