Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0064
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    29   1.9  
At2g06140.1 68415.m00675 hypothetical protein                          29   1.9  
At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY) domain-c...    27   5.8  
At5g62020.1 68418.m07785 heat shock factor protein, putative (HS...    27   7.7  

>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 273  SANLSIKPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGPVPETAYALYLRDT 431
            +  L  K S   K P+T  I +  T+ RN+ R    R   V + A+ L L DT
Sbjct: 2036 NVRLQKKDSDGKKKPSTLEIRLEKTSKRNSSRALAPRFPKVKDEAWWLVLGDT 2088


>At2g06140.1 68415.m00675 hypothetical protein 
          Length = 633

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 278 ESINKTVKKDKDADNLLDQYEDYEPAEYQE 367
           ES+++ +  DK  DNL  + E +EP E +E
Sbjct: 588 ESLDRILDLDKKVDNLTTRIEGHEPMESEE 617


>At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 447

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 14  RGETDERTTDWRRHYSQSIRTNVT-VCQLFICFSFIDRVRTSLLRSA 151
           +GE D      R  Y Q ++ + + VC L  C  FI+ VR   L  A
Sbjct: 285 KGEIDAALAKLRDSYPQLVQNDKSEVCFLLHCQKFIELVRIGALEEA 331


>At5g62020.1 68418.m07785 heat shock factor protein, putative (HSF6)
           / heat shock transcription factor, putative (HTSF6)
           identical to heat shock transcription factor 6 (HSF6)
           SP: Q9SCW4 from [Arabidopsis thaliana] ;contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 299

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 17  GETDERTTDWRRHYSQSIRTNVTVC 91
           GE  +  T W RHY+   RTN  VC
Sbjct: 277 GENSDEETPWLRHYN---RTNQRVC 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,668
Number of Sequences: 28952
Number of extensions: 240252
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)