Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0063
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02405.1 68414.m00187 proline-rich family protein contains pr...    29   1.6  
At2g48130.1 68415.m06025 protease inhibitor/seed storage/lipid t...    29   2.1  
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    28   3.6  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   3.6  
At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing ...    28   4.8  
At4g21040.1 68417.m03043 Dof-type zinc finger domain-containing ...    27   6.3  
At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   8.3  
At4g03400.1 68417.m00462 auxin-responsive GH3 family protein sim...    27   8.3  
At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containi...    27   8.3  

>At1g02405.1 68414.m00187 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 134

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 473 PPVNCTRPNEVWCPSPPPCLQETCDDVDLPPVP 375
           PP +CT P+    PSPPP  + +C    LPP P
Sbjct: 56  PPPSCT-PSPP-PPSPPPPKKSSCPPSPLPPPP 86


>At2g48130.1 68415.m06025 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 183

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -1

Query: 422 PCLQETCDDVDLPPVPC----NEFIKSSPRCIC 336
           PCL     +   P  PC    +  IKSSP+CIC
Sbjct: 39  PCLSYITGNSTTPSQPCCSRLDSVIKSSPQCIC 71


>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
           carteri f. nagariensis GP|6523547; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 449 NEVWCPSPPPCLQETCDDVDLPPVP 375
           + V+CP PPPC+   C+    PP P
Sbjct: 26  HSVYCPPPPPCIC-ICNPGPPPPQP 49


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 470 PVNCTRPNEVWC-PSPPPCLQETCDDVDLPPVPCNEFIKSSP 348
           PV+   P  V+  P PPPC++        PP PC E+    P
Sbjct: 597 PVSSPPPTPVYSPPPPPPCIEPP------PPPPCIEYSPPPP 632


>At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PATCHX:G2393775
          Length = 249

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 449 NEVWCPSPPPCLQETCDDVDLPPVPCNEFIKSSPRCICKD 330
           N+V  P PPP +   CD  +      N + +  PR  CK+
Sbjct: 15  NDVKPPPPPPRVCARCDSDNTKFCYYNNYCEFQPRYFCKN 54


>At4g21040.1 68417.m03043 Dof-type zinc finger domain-containing
           protein finger protein rolB, Arabidopsis thaliana,
           PID:g1359493
          Length = 232

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 449 NEVWCPSPPPCLQETCDDVDLPPVPCNEFIKSSPRCICKD 330
           N+V  P PPP +   CD  +      N + +  PR  CK+
Sbjct: 15  NDVKPPPPPPRVCARCDSDNTKFCYYNNYSEFQPRYFCKN 54


>At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to  Flavonol synthase (EC
           1.14.11.-) (FLS) from Lisianthus russellianus] {Eustoma
           grandiflorum} [SP|Q9M547], Leucoanthocyanidin
           dioxygenase (LDOX) (Leucoanthocyanidin hydroxylase)
           (Anthocyanidin synthase) from Malus spp. [SP|P51091];
           contains Pfam profile PF03171: oxidoreductase,
           2OG-Fe(II) oxygenase family
          Length = 349

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 267 RVYVATFLSANADSAIVPEVIIFADASRTAFYKFVTR 377
           R+YVATF +A+ D  I P   + ++A R   YK V +
Sbjct: 293 RIYVATFCNADEDKEIQPLNGLVSEA-RPRLYKAVKK 328


>At4g03400.1 68417.m00462 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 591

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 282 TFLSANADSAIVPEVIIFADASRTAFYKFVTRYRRK 389
           +++  N D  + PE + FA     ++++F+  YRR+
Sbjct: 341 SWIGVNVDPHLPPEDVSFAVIPTFSYFEFIPLYRRQ 376


>At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 731

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 329 NYFRNDSGICVCAQECRDINA 267
           +YF +  G+C+ AQ+CR ++A
Sbjct: 57  HYFDHLLGLCLTAQQCRQVHA 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,411,886
Number of Sequences: 28952
Number of extensions: 220132
Number of successful extensions: 615
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)