Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0060
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ...    41   8e-04
At1g63240.1 68414.m07148 expressed protein                             30   1.6  
At2g42180.1 68415.m05220 expressed protein                             29   2.7  
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote...    28   4.8  

>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 788

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +2

Query: 26  LSESERECARMAQLSELLKAELRRV-RGTTQNAHNTEYMKNVTLKFLTLPSGDERIRLVP 202
           + E ERE    +Q   +LK ELR + R   +   +  Y+KNV LK L   +G+    L+P
Sbjct: 680 IEELERENRLHSQQEAVLKTELREMERKQKREGVDMTYLKNVILKLLE--TGEVEA-LLP 736

Query: 203 VLQKILTLTPDETQKIQ 253
           V+  +L  +P+E QK Q
Sbjct: 737 VVGMLLQFSPEEIQKCQ 753


>At1g63240.1 68414.m07148 expressed protein
          Length = 548

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 208 KNWDKSNTLVTGWKG*E---LESDVLHVLG 128
           KNW+KS +  TG +  E   LESDV+H+ G
Sbjct: 286 KNWNKSESDETGTRNIEIIDLESDVIHISG 315


>At2g42180.1 68415.m05220 expressed protein
          Length = 166

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 618 IFLNLKKRKCKLLFKTLPLYSELKFIQHNIFFQSSHTD*PL 496
           + + + K   K LF  +   ++    QHNIFF SSH   P+
Sbjct: 40  VLIEISKHNKKRLFMMMFYTTKSSMNQHNIFFGSSHVVVPV 80


>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 906

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 612 LNLKKRKCKLLFKTLPLYSELKFIQHNIFFQSSHTD 505
           L LKK+K     KT+P+YS+L  ++H++    +H +
Sbjct: 105 LKLKKKK-GTAGKTIPVYSKLFGLEHDVTVDRAHAE 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,384,942
Number of Sequences: 28952
Number of extensions: 232690
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)