Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0059
         (377 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22170.1 68414.m02771 phosphoglycerate/bisphosphoglycerate mu...    65   2e-11
At1g78050.1 68414.m09095 phosphoglycerate/bisphosphoglycerate mu...    64   2e-11
At3g50520.1 68416.m05525 phosphoglycerate/bisphosphoglycerate mu...    60   6e-10
At5g04120.1 68418.m00398 phosphoglycerate/bisphosphoglycerate mu...    55   1e-08
At5g22620.1 68418.m02643 phosphoglycerate/bisphosphoglycerate mu...    41   2e-04
At4g17510.1 68417.m02620 ubiquitin carboxyl-terminal hydrolase, ...    31   0.34 
At4g12870.1 68417.m02015 gamma interferon responsive lysosomal t...    30   0.44 
At3g52155.1 68416.m05725 expressed protein                             30   0.59 
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ...    30   0.59 
At1g08940.1 68414.m00995 phosphoglycerate/bisphosphoglycerate mu...    27   3.1  
At3g05170.1 68416.m00564 phosphoglycerate/bisphosphoglycerate mu...    27   5.5  

>At1g22170.1 68414.m02771 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to SP|P31217
           Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli
           O157:H7}; contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 334

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 33/85 (38%), Positives = 50/85 (58%)
 Frame = +2

Query: 68  SNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAH 247
           S K   +  +++IRHGES WN+KNLF G  D  L++KG +EA+ AGK  +      D+  
Sbjct: 71  SQKKSNEAALILIRHGESLWNEKNLFTGCVDVPLTEKGVEEAIEAGK--RISNIPVDVIF 128

Query: 248 TSVLKRAQITLNSILKEIGQPDIPV 322
           TS L RAQ+T    + +  +  +P+
Sbjct: 129 TSSLIRAQMTAMLAMIQHRRKKVPI 153


>At1g78050.1 68414.m09095 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to SP|P31217
           Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli
           O157:H7}; contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 332

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 35/92 (38%), Positives = 52/92 (56%)
 Frame = +2

Query: 47  SRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEG 226
           S+ + + S K   +  +++IRHGES WN+KNLF G  D  L+ KG  EA+ AGK  K   
Sbjct: 65  SKNKPHESKKKSNEAALILIRHGESLWNEKNLFTGCVDVPLTQKGVGEAIEAGK--KISN 122

Query: 227 YQFDIAHTSVLKRAQITLNSILKEIGQPDIPV 322
              D+  TS L RAQ+T    + +  +  +P+
Sbjct: 123 IPVDLIFTSSLIRAQMTAMLAMTQHRRKKVPI 154


>At3g50520.1 68416.m05525 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to SP|P00950
           Phosphoglycerate mutase 1 (EC 5.4.2.1) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 230

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 33/94 (35%), Positives = 52/94 (55%)
 Frame = +2

Query: 92  KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 271
           +IV++RHGE+ WN +    G  D +L+D GRQ+A    + L  E  +    ++S LKRA 
Sbjct: 15  EIVVVRHGETSWNAERKIQGHLDVELNDAGRQQAQRVAERLSKE-QKISHVYSSDLKRAF 73

Query: 272 ITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGL 373
            T   I  + G+ ++  ++   L ERH G + GL
Sbjct: 74  ETAQIIAAKCGKLEVLTDRD--LRERHLGDMQGL 105


>At5g04120.1 68418.m00398 phosphoglycerate/bisphosphoglycerate
           mutase family protein low similarity to SP|P36623
           Phosphoglycerate mutase (EC 5.4.2.1)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00300: phosphoglycerate mutase family
          Length = 238

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 35/94 (37%), Positives = 53/94 (56%)
 Frame = +2

Query: 92  KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 271
           +IV++RHGE+ WN      G  ++DL++ G ++AVA  + L  E     + ++S LKRA+
Sbjct: 26  EIVLVRHGETTWNAAGRIQGQIESDLNEVGLKQAVAIAERLGKEERPVAV-YSSDLKRAK 84

Query: 272 ITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGL 373
            T   I K    P++ +E    L ERH G L GL
Sbjct: 85  DTALMIAKTCFCPEV-IEVP-DLKERHVGSLQGL 116


>At5g22620.1 68418.m02643 phosphoglycerate/bisphosphoglycerate
           mutase family protein weak similarity to SP|P15259
           Phosphoglycerate mutase, muscle form (EC 5.4.2.1 {Homo
           sapiens}; contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 482

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = +2

Query: 92  KIVMIRHGESEWNQKNLFCGWFD-ADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRA 268
           ++V++RHG+S WN++    G  D + L+ KG  +A  + + L  +   FD+  TS LKR+
Sbjct: 49  RVVLVRHGQSTWNEEGRIQGSSDFSVLTKKGESQAEISRQMLIDD--SFDVCFTSPLKRS 106

Query: 269 QITLNSI 289
           + T   I
Sbjct: 107 KKTAEII 113


>At4g17510.1 68417.m02620 ubiquitin carboxyl-terminal hydrolase,
           putative / ubiquitin thiolesterase, putative similar to
           SP|Q9JKB1 Ubiquitin carboxyl-terminal hydrolase isozyme
           L3 (EC 3.4.19.12) (UCH- L3) (Ubiquitin thiolesterase L3)
           {Mus musculus}; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 234

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 370 SSEATIMPLVQSPSFLNRYIWLTDLL*DRVQCN 272
           SS    +PL  +P  +N+Y+W   L  D  +CN
Sbjct: 8   SSSKRWLPLESNPDVMNQYLWGLGLAPDEAECN 40


>At4g12870.1 68417.m02015 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 229

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 202 GSNSFLTTFVAEV--SVEPSTEEILLVPFGFAMTNHNNLILCRH 77
           G  SF+   + +V  S   +  ++ LVPFG+A  ++N  ++C+H
Sbjct: 45  GCQSFIVDELVKVFDSDLDTITDVKLVPFGYAKVSNNLTVICQH 88


>At3g52155.1 68416.m05725 expressed protein
          Length = 218

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = +2

Query: 92  KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 271
           +++++RH  S W+  +L     D  LS  G  +A    + L + G+   +  +S   R +
Sbjct: 44  RLILLRHAHSSWDDLSL--RDHDRPLSKTGEADAAKVAQILSSLGWLPQLILSSDATRTR 101

Query: 272 ITLNSILKEI 301
            TL S+  ++
Sbjct: 102 ETLKSMQAQV 111


>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
           similar to leucine zipper-EF-hand containing
           transmembrane protein 1 [Homo sapiens] GI:4235226;
           contains Pfam profile PF00036: EF hand
          Length = 736

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 236 DIAHTSVLKRAQITLNSILKEIGQPDIPVEKTWRLNERHYGG 361
           D   +++L R +  L  + KEI   D  +   WRL +R Y G
Sbjct: 630 DKTSSALLDRVETMLQKLEKEIDDVDNKIGNRWRLLDRDYDG 671


>At1g08940.1 68414.m00995 phosphoglycerate/bisphosphoglycerate
           mutase family protein contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 281

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 92  KIVMIRHGESEWN-QKNLFCGWFD--ADLSDKGRQEAVAAGKALKA 220
           +I+++RHGES  N     +    D    L+++GR +A  AGK ++A
Sbjct: 11  RIILMRHGESAGNIDAGAYATTPDHKIPLTEEGRAQAREAGKKMRA 56


>At3g05170.1 68416.m00564 phosphoglycerate/bisphosphoglycerate
           mutase family protein contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 316

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 71  NKMPAKYKIVMIRHGESEWN-QKNLFCGWFD--ADLSDKGRQEAVAAGKALKA 220
           NK+  K +I+++RHGESE N     +    D    L+D G  +A  AG  L A
Sbjct: 5   NKLLPK-RIILVRHGESEGNLDTAAYTTTPDHKIQLTDSGLLQAQEAGARLHA 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,590,939
Number of Sequences: 28952
Number of extensions: 131619
Number of successful extensions: 308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)