Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0058
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 40 0.001
At2g17580.1 68415.m02034 polynucleotide adenylyltransferase fami... 40 0.001
At1g28090.2 68414.m03439 polynucleotide adenylyltransferase fami... 40 0.001
At1g28090.1 68414.m03438 polynucleotide adenylyltransferase fami... 40 0.001
At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /... 39 0.002
At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /... 39 0.002
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 38 0.004
At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04... 29 2.6
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 29 3.4
At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containi... 27 7.9
>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 527
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 304 HEIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEV 429
H++ + GG VRDL++ TPKD D T+A E+ F E+
Sbjct: 95 HDVYLVGGCVRDLILKRTPKDFDILTSAELREVVRTFPRCEI 136
>At2g17580.1 68415.m02034 polynucleotide adenylyltransferase family
protein similar to SP|P13685 Poly(A) polymerase (EC
2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 757
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +1
Query: 250 SIFTEEVIDLKKIFDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEV 429
S+ E +++ ++ + + + GG VRDL++ PKD D TTA ++++ +F +V
Sbjct: 72 SMIPESSMNVLRLLRRQGFDAYLVGGCVRDLILNRVPKDYDVITTADLKQIRRLFHRAQV 131
>At1g28090.2 68414.m03439 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 505
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +1
Query: 226 KVDSPEF---KSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATPE 396
K+D+ EF +S+ + + K ++ + GG VRDL++ PKD D TTA +
Sbjct: 48 KLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELK 107
Query: 397 EMKEMF 414
E++++F
Sbjct: 108 EVRKVF 113
>At1g28090.1 68414.m03438 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 541
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +1
Query: 226 KVDSPEF---KSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATPE 396
K+D+ EF +S+ + + K ++ + GG VRDL++ PKD D TTA +
Sbjct: 84 KLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAELK 143
Query: 397 EMKEMF 414
E++++F
Sbjct: 144 EVRKVF 149
>At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /
tRNA adenylyltransferase, putative similar to tRNA
nucleotidyltransferase [Lupinus albus] GI:1139585;
contains Pfam profile PF01743: polyA polymerase family
protein
Length = 603
Score = 39.1 bits (87), Expect = 0.002
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 13/116 (11%)
Frame = +1
Query: 307 EIRIAGGAVRDLLMGLTPKDLDFAT-----TATPEEMKEMFTA--EEVR---MINVNGER 456
++R+AGG VRD L+G D+D A + ++ KE ++ EEV+ +I N ++
Sbjct: 109 QLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDKFKEYLSSRDEEVQGDTVIERNPDQ 168
Query: 457 HGTI-TARINDKENF-EVTTLRIDMVTD-GRFADVQFTKDWKLDANRRDLTINSMF 615
+ TA++ + + + LR + T+ R ++F K DA RRDLTINS+F
Sbjct: 169 SKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTMKFGTA-KDDAFRRDLTINSLF 223
>At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /
tRNA adenylyltransferase, putative similar to tRNA
nucleotidyltransferase [Lupinus albus] GI:1139585;
contains Pfam profile PF01743: polyA polymerase family
protein
Length = 605
Score = 39.1 bits (87), Expect = 0.002
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 13/116 (11%)
Frame = +1
Query: 307 EIRIAGGAVRDLLMGLTPKDLDFAT-----TATPEEMKEMFTA--EEVR---MINVNGER 456
++R+AGG VRD L+G D+D A + ++ KE ++ EEV+ +I N ++
Sbjct: 109 QLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEFLDKFKEYLSSRDEEVQGDTVIERNPDQ 168
Query: 457 HGTI-TARINDKENF-EVTTLRIDMVTD-GRFADVQFTKDWKLDANRRDLTINSMF 615
+ TA++ + + + LR + T+ R ++F K DA RRDLTINS+F
Sbjct: 169 SKHLETAKLRIYDQWIDFVNLRSEEYTENSRIPTMKFGTA-KDDAFRRDLTINSLF 223
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 304 HEIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEV 429
+++ + GG VRDL++ TPKD D T+A E+ F+ E+
Sbjct: 92 YDVYLVGGCVRDLILKRTPKDFDILTSAELREVVRSFSRCEI 133
>At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 390
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +1
Query: 265 EVIDLKKIFDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEVRMINV 444
E ID KK+ K+ H I ++ ++ +T DL F T+ EM +++ R +V
Sbjct: 236 ENIDEKKLMHKFNHRIVVSDAVFKNRWSNITSSDLTFLTS----EMLNSVSSD--RFSSV 289
Query: 445 NGERHGTITARINDKENFEVTTLRI 519
+ G + DKE+ E+ + I
Sbjct: 290 DRVHRG----NLRDKEDMEMKRMLI 310
>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 579
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -2
Query: 623 NPKNIEFIVRSLLLASSFQSLVN*TSAKRPSVTISILKVVTSKFSLSLIRAVIVPCLS 450
NP ++ + + +SS S++ S + S T++ +K S SL I+ V++PCL+
Sbjct: 54 NPSSLTLKLLMVYQSSSSNSVLRFRSIYQLSQTLTDVKFKPSLDSLFEIKGVLIPCLT 111
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -2
Query: 269 TSSVNILLNSGESTLITIGFSRHFKFKSI----FDRNLLRLGSVTLHVPLSWKNCPTPKI 102
T +++ LLN + G R F F + D LLR G + +H+ +S+ N P+ KI
Sbjct: 344 TITLSGLLNFTDGLWSCCGSERIFVFTTNHIEKLDPALLRSGRMDMHIYMSFCNFPSLKI 403
Query: 101 LL 96
LL
Sbjct: 404 LL 405
>At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 773
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = -2
Query: 455 LSPLTFIILTSSAVNISFISSGVAVVAKSRSFGVSPIKRSLTAPPAILISCLYLSKIFFR 276
LSPL FI+ +SS+ ++S G + G S + T I C SKI
Sbjct: 7 LSPLRFIVSSSSSKLTPYVSRGRGLSGIDNGAGCSCSRSVTTMIGNEFIRCQDESKILQL 66
Query: 275 SITSSVNILLNSGESTLI 222
I ++ G S L+
Sbjct: 67 QIVDALRSGERQGASALL 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,789,737
Number of Sequences: 28952
Number of extensions: 252547
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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