Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0051
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein c...    51   9e-07
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    38   0.005
At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1) (...    30   1.7  
At4g26640.2 68417.m03839 WRKY family transcription factor contai...    29   3.0  
At3g47030.1 68416.m05107 F-box family protein contains F-box dom...    29   3.0  
At4g26640.1 68417.m03838 WRKY family transcription factor contai...    28   5.3  
At3g18200.1 68416.m02315 nodulin MtN21 family protein similar to...    28   7.0  
At2g38790.1 68415.m04762 expressed protein                             27   9.2  

>At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein
           contains Pfam profile PF05131: Pep3/Vps18/deep orange
           family; similar to Vacuolar protein sorting 18 (hVPS18)
           (SP:Q9P253) {Homo sapiens}
          Length = 994

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 34/133 (25%), Positives = 60/133 (45%)
 Frame = +3

Query: 303 LITHAAVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLL 482
           +IT  A  +D +V+  + G + R D     S  +I  +        +  +F+DP G H +
Sbjct: 23  MITCMAAGNDVIVLGTSKGWIIRYDF-GVGSSNDIDLAVGRTGEQSIHKVFVDPGGSHCI 81

Query: 483 MSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPILLGTSKG 662
              ++ T  G  E  Y H K  K + +S++    +  V WN +  +   T  I+LGT  G
Sbjct: 82  ---ATVTGVGGAETFYTHAKWLKPRVLSRLKGLLVNAVAWNRQQITEVSTKEIILGTQDG 138

Query: 663 HLLETELEPNNDK 701
            L E  ++  + +
Sbjct: 139 QLFEMAVDEKDKR 151


>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +3

Query: 96  LLFAVVGVVIRTVFSKMTSILDQYKQAAQASYRTKPPAEPMISSGYINMQLEDNVPMFTK 275
           L  A V   + TV+SK+  I    K   ++  ++ P    MIS    N   ED + +F +
Sbjct: 351 LSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410

Query: 276 -QKMNLNPSDLITHAAVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYS 416
            QK   +P+ +     +S+   + A++ GK     +R+ D E  I+ S
Sbjct: 411 MQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVS 458


>At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1)
           (CHL1) identical to nitrate/chlorate transporter
           SP:Q05085 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00854 POT family
          Length = 590

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 289 RFIFCFVNIGTLSSSCILMYPEDIMGSAGGF 197
           RF FC +N+G+L +  +L+Y +D +G   G+
Sbjct: 192 RFFFC-INVGSLLAVTVLVYVQDDVGRKWGY 221


>At4g26640.2 68417.m03839 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 557

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 396 EQEIHYSKYCQPTSKLSGLFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIP 575
           E  +  S      S  +G    P   H+  S SS T  G  +  +  QKSS+ +F     
Sbjct: 67  ESPVFISNIKPEPSPTTGSLFKPRPVHISASSSSYTGRGFHQNTFTEQKSSEFEFRPPAS 126

Query: 576 NYEITEVG 599
           N    E+G
Sbjct: 127 NMVYAELG 134


>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 414

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 667 KCPLEVPNKIGPVMLLDVFSK 605
           KCP+E P +I   +L+DVFS+
Sbjct: 25  KCPIEKPEEIPDDLLIDVFSR 45


>At4g26640.1 68417.m03838 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 485

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 435 SKLSGLFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVG 599
           S  +G    P   H+  S SS T  G  +  +  QKSS+ +F     N    E+G
Sbjct: 8   SPTTGSLFKPRPVHISASSSSYTGRGFHQNTFTEQKSSEFEFRPPASNMVYAELG 62


>At3g18200.1 68416.m02315 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 360

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 331 IT*WWLWRMGNCLEWT*GILILSKKFTTQNIVSQPLN*AVCFW 459
           +T  WL+ MG+CL W  G ++L      Q      L    CF+
Sbjct: 181 LTLGWLYLMGHCLSWA-GWMVLQAPVLKQYPAKLTLTSFTCFF 222


>At2g38790.1 68415.m04762 expressed protein 
          Length = 204

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 165 YKQAAQASYRTKPPAEPMISSGYINMQLEDNVPMFTKQKMNLNPSDL 305
           + +   A  + K  + P   S  +   L    P FT + +NL PSDL
Sbjct: 123 FNKIGDAVSQIKQDSRPPTKSMTMRRSLSAGSPRFTSKGVNLGPSDL 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,335
Number of Sequences: 28952
Number of extensions: 296876
Number of successful extensions: 598
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)