Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0047
(337 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 63 5e-11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 63 5e-11
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 62 9e-11
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 61 2e-10
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 50 3e-07
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 50 3e-07
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 50 3e-07
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 50 3e-07
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 50 3e-07
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 48 2e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 45 1e-05
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 44 2e-05
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 44 3e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 3e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 43 4e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 43 6e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 43 6e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 1e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 42 1e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 42 1e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 41 2e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 41 2e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 40 3e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 40 4e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 39 7e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 39 0.001
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 38 0.001
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 38 0.001
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.002
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 38 0.002
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.002
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.003
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 36 0.007
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 36 0.007
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.007
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.009
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.009
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.009
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 36 0.009
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.009
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.009
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.012
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.012
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.012
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 35 0.012
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 35 0.016
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.016
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 35 0.016
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 34 0.021
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 34 0.027
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.036
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.036
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.036
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.047
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 33 0.047
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 33 0.063
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.063
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.083
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.083
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 32 0.083
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 32 0.083
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 32 0.083
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.11
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 32 0.11
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.11
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 31 0.14
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 31 0.14
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.14
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.19
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 31 0.19
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 31 0.19
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.19
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 0.19
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 31 0.25
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 31 0.25
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 31 0.25
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.25
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.25
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 31 0.25
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 30 0.33
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 0.33
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 0.44
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 30 0.44
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 30 0.44
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 30 0.44
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 0.44
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 0.58
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 29 0.58
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 0.58
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 0.58
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 0.77
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 29 0.77
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 29 0.77
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 0.77
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 29 0.77
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 29 0.77
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 29 1.0
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 29 1.0
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 29 1.0
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 28 1.3
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 1.3
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 1.3
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 1.3
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 1.3
At1g05510.1 68414.m00563 expressed protein 28 1.3
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 1.8
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 28 1.8
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 28 1.8
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 1.8
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 2.4
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 27 2.4
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 27 2.4
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 27 2.4
At3g08670.1 68416.m01007 expressed protein 27 2.4
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom... 27 3.1
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 3.1
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 3.1
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 27 3.1
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 27 3.1
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 27 3.1
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 27 3.1
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 4.1
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ... 27 4.1
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 27 4.1
At2g47310.1 68415.m05906 flowering time control protein-related ... 27 4.1
At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containi... 27 4.1
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 27 4.1
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 27 4.1
At1g03020.1 68414.m00274 glutaredoxin family protein contains IN... 27 4.1
At5g45840.1 68418.m05639 leucine-rich repeat transmembrane prote... 26 5.4
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 26 5.4
At4g28170.1 68417.m04039 hypothetical protein 26 5.4
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 26 5.4
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 26 5.4
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 26 5.4
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 26 5.4
At1g15030.1 68414.m01796 expressed protein 26 5.4
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 26 5.4
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 26 7.2
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 26 7.2
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 26 7.2
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 26 7.2
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 26 7.2
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 26 7.2
At4g17660.1 68417.m02639 protein kinase, putative similar to pro... 26 7.2
At3g62930.1 68416.m07069 glutaredoxin family protein contains gl... 26 7.2
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 26 7.2
At1g47900.1 68414.m05334 expressed protein 26 7.2
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 26 7.2
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 25 9.5
At5g39980.1 68418.m04848 pentatricopeptide (PPR) repeat-containi... 25 9.5
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ... 25 9.5
At4g20800.1 68417.m03019 FAD-binding domain-containing protein s... 25 9.5
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 62.9 bits (146), Expect = 5e-11
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS 337
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA S
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAIS 56
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 62.9 bits (146), Expect = 5e-11
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS 337
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA S
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAIS 56
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 62.1 bits (144), Expect = 9e-11
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDA 54
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDA 54
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 328
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 329 A 331
A
Sbjct: 61 A 61
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 328
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 329 A 331
A
Sbjct: 61 A 61
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 328
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 329 A 331
A
Sbjct: 61 A 61
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 328
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 329 A 331
A
Sbjct: 61 A 61
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 328
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 329 A 331
A
Sbjct: 61 A 61
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = +2
Query: 158 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 328
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 329 A 331
A
Sbjct: 61 A 61
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 167 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDA 60
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDA 331
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDA 61
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 167 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDA 60
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +2
Query: 209 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKA 143
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 212 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 322
KED++ E K+GKLN ++V N GF ++ FEN Q A
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAA 524
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 328
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 329 A 331
A
Sbjct: 341 A 341
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.7 bits (96), Expect = 6e-05
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 331
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 42.7 bits (96), Expect = 6e-05
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 331
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +2
Query: 164 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEA 378
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEA 355
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEA 357
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAE 325
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAE 127
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAE 325
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAE 126
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARA 85
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDA 51
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 209 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
++ D+ER F+ YGK+ +V + N FAF++F ++A A
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKA 145
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 164 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 331
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 332 CS 337
S
Sbjct: 389 LS 390
Score = 32.7 bits (71), Expect = 0.063
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 331
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASA 285
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF 304
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDA 51
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 200 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+ + DLER F+ YGK+ +V + N FAFI++E ++A A
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRA 146
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDA 51
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 200 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+ + DLER F+ YGK+ +V + N FAFI++E ++A A
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRA 146
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +2
Query: 164 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG-KGCGFVQFADRKSAEDA 372
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDA 51
Score = 32.7 bits (71), Expect = 0.063
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 200 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRA 147
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS 337
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A S
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQAKS 303
Score = 32.7 bits (71), Expect = 0.063
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 322
++VG L + DL F +YG ++ + V + GFAFI + +++EA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEA 66
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 334
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 35.9 bits (79), Expect = 0.007
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 155 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEA 322
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N + A
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 323 EDA 331
+DA
Sbjct: 61 DDA 63
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 35.9 bits (79), Expect = 0.007
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 322
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDA 99
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 35.9 bits (79), Expect = 0.007
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 322
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDA 129
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 331
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.5 bits (78), Expect = 0.009
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDA 331
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDA 331
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 331
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARA 281
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEA 322
G +YV L + + E L F ++G + S V +P G + F+ F EA
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEA 381
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDACS 337
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC+
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.5 bits (78), Expect = 0.009
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Frame = +2
Query: 161 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 322
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 323 EDA 331
A
Sbjct: 132 MKA 134
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 310
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 310
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 310
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 337
++V + G K+ L R F+K+G++ ++ +P G A+IEF + AE+A S
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 34.7 bits (76), Expect = 0.016
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 334
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ + A AC
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC 71
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 212 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
++D+ E KYG +N ++V N GF ++ F++++ A A
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAA 497
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDA 331
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ ++ A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAA 322
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 34.7 bits (76), Expect = 0.016
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 331
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTA 175
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 34.3 bits (75), Expect = 0.021
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 325
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 326 DA 331
+A
Sbjct: 260 NA 261
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.9 bits (74), Expect = 0.027
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARA 280
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 164 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 331
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.5 bits (73), Expect = 0.036
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA 145
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.5 bits (73), Expect = 0.036
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA 145
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 33.5 bits (73), Expect = 0.036
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +2
Query: 161 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 316
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++ +
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
Query: 317 EAE 325
+
Sbjct: 175 SVD 177
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 33.1 bits (72), Expect = 0.047
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKA 258
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 164 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 334
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 335 S 337
S
Sbjct: 169 S 169
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDA 331
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQA 360
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 33.1 bits (72), Expect = 0.047
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 164 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 328
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 329 A 331
A
Sbjct: 78 A 78
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 32.7 bits (71), Expect = 0.063
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 200 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRA 106
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.7 bits (71), Expect = 0.063
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEA 94
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.3 bits (70), Expect = 0.083
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFENLQEAEDA 331
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++ ++A D+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDS 166
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 158 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 310
M S +++VGG+ ++ L F YG+++ V + P GF F+ F +
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.083
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 334
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++ + A AC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 32.3 bits (70), Expect = 0.083
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 325
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 326 DA 331
A
Sbjct: 305 KA 306
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 32.3 bits (70), Expect = 0.083
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 325
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 326 DA 331
A
Sbjct: 313 KA 314
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 32.3 bits (70), Expect = 0.083
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 334
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 335 S 337
S
Sbjct: 154 S 154
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
+YVG + E++++ F G +N V + + P GFA++EF ++ +++
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNS 159
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 209 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
++ D+ER F+ YGK+ +V + N FAF++F ++A A
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKA 119
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 310
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
++++VGG+ + L F KYG++ + ++ GFAF+ F + +EA +A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEA 322
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAA 278
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKA 279
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 158 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 322
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 323 EDA 331
DA
Sbjct: 61 RDA 63
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 158 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 322
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 323 EDA 331
DA
Sbjct: 61 RDA 63
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 158 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 322
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 323 EDA 331
DA
Sbjct: 61 RDA 63
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 158 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 322
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 323 EDA 331
DA
Sbjct: 61 RDA 63
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 331
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRA 257
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
+++++GG+ + ++ L F KYG++ V L+ GF F+ F + + A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.7 bits (66), Expect = 0.25
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +2
Query: 209 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
+ E+L F+++G + V++ + P GFAF+EF + +A +A
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEA 104
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 310
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKA 279
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAED 328
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED 147
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEF 304
G +++VG L + +DL F ++G + ++ +P GF F+ F
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = +2
Query: 206 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAED 328
+K+ED+E F +YGK+NSV + + G A +EF ++A++
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQN 173
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 29.9 bits (64), Expect = 0.44
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEA 148
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 334
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDA 331
VYV L I ++E EF +G + V L +AF+EFE++ E+A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENA 315
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDA 331
VYV L I ++E EF +G + V L +AF+EFE++ E+A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENA 374
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 242 YGKLNSVWVALNPPGFAFIEFENLQE 319
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 29.5 bits (63), Expect = 0.58
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDA 331
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNA 73
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.5 bits (63), Expect = 0.58
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS 337
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A S
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALS 331
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.5 bits (63), Expect = 0.58
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
R ++GGL L F+KYG L V L+ GF FI F+ + ++A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
T V+VGGL + + L+ F +YG++ V + F++F AE+A
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEA 312
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 280
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 29.1 bits (62), Expect = 0.77
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
GT V V L + DLE F YG++ + N F+EF +++ A+ A
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAA 274
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDA 331
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHA 68
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRA 74
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDA 331
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNA 68
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDA 331
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNA 68
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVA 347
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 337
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A S
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 337
TRVYVG L + L F YG + V + GF F+ + + EAE A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
R+YVG L + LER F ++GK+ V + GF F++ N E A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDA 331
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 206 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 328
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 206 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 328
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 206 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 328
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 265
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 286
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 123
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 286
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 59
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 286
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 125
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 268
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKL 253
GT++Y+ L G+ ED++ F + G L
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDL 134
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDA 331
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 725
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDA 331
+++VG L + + + +++ F KYG + + + G AF+++E ++A A
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSA 162
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDA 331
+++VG L + + + +++ F KYG + + + G AF+++E ++A A
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSA 162
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 306 SNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 166
S+SM KA+P S T S P LS S P++RP T TR P
Sbjct: 230 SSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSP 277
>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
domain-containing protein low similarity to SP|P40748
Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 1027
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 217 FLLDSLDETADVHASTTRTHGLVLFMKIQLKFIYVNKN 104
FL + DE AD+ + H K+QL+ NKN
Sbjct: 626 FLKHTADELADLSVALVGNHAQASQSKLQLRIFLENKN 663
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +2
Query: 248 KLNSVWVALNPP-----GFAFIEFENLQEAEDA 331
K N +W+ ++P G+ FIEF QEA++A
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNA 121
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 322
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSA 70
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 310
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACS 337
VYV + + + +E L F G++ + +P FAF+EF + Q A +A S
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS 198
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/51 (19%), Positives = 26/51 (50%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
++V + ++ +L F++YG + +++ GF I + +++ A A
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMA 220
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/51 (19%), Positives = 26/51 (50%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
++V + ++ +L F++YG + +++ GF I + +++ A A
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMA 220
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKL 253
GTR++V L +G+ ED+ F + G++
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEV 119
>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 418
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 249 FPYLSNSRSRSSFLIPSTRPPTYTRVP 169
FP+ ++S + S+F+ P P YT P
Sbjct: 49 FPFPNSSPAPSTFIYPPPTPSPYTHAP 75
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACS 337
VYV + + + +E+L F G++ V +P FAFIEF N + A A S
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALS 226
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEF 304
++YV L + K ++ F +YG + +++AL+ G+AF++F
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQF 254
>At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containing
protein contains Pfam TIGR00756: pentatricopeptide
repeat domain
Length = 299
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 191 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAE 325
GL KE+ E+ D GK S W +L +E E+ +E E
Sbjct: 172 GLQHRCVKEEAEKVVDMLGKKESKWESLAHKVNTLVEDEDAKEEE 216
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACS 337
VYV + + + +E L F G++ + +P FAF+EF + Q A A S
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS 185
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 206 IKKEDLEREFDKYGKLNSVWVALNPPG 286
I KE LE+ + K N VW+ NP G
Sbjct: 380 IPKEGLEKIWKTMLKFNFVWIEFNPYG 406
>At1g03020.1 68414.m00274 glutaredoxin family protein contains
INTERPRO Domain IPR002109, Glutaredoxin
(thioltransferase)
Length = 102
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 327 SSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRV 172
S SC S+S+K+ G+ A T + +SN L+ PT V
Sbjct: 17 SKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELGCKPTVPAV 68
>At5g45840.1 68418.m05639 leucine-rich repeat transmembrane protein
kinase, putative and genscan+
Length = 668
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 252 SFPYLSNSRSRSSFLIPSTRPP 187
SFP L+N++ R LIP + PP
Sbjct: 263 SFPALTNAKKRIPPLIPPSSPP 284
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 304
+++VGGL + + F KYG++ + + P GF F+ +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY 90
>At4g28170.1 68417.m04039 hypothetical protein
Length = 135
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 312 KFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 166
+F +S+ A P G AT + L R F+ P+ PP + PP
Sbjct: 56 RFESSVNAVPFGLVATGVLIAIFLLIAFFERFMFVKPTPSPPLDQKFPP 104
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 304
++++GGL + + F KYG++ + + P GF FI F
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITF 67
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 337
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 304
++++GGL + + F KYG++ + + P GF FI F
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITF 67
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 337
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 310
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKD 94
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKL 253
GT VY+ L +G+ ED+ + + G+L
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGEL 133
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 239 YRTRVRDLPS*FPXXXXXXXREYHPNSWFSIIYEDTTKI 123
+ ++ DL S FP + P+SWFS+ + KI
Sbjct: 222 FADKMSDLASRFPELKTLRSCDLLPSSWFSVAWYPIYKI 260
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKL 253
T V+VGGL + + L+ F +YG++
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEI 287
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 336 LHASSASCKFSNSMKAKPGGFSATQTEF 253
+ S CKF S A P G SAT EF
Sbjct: 138 IDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 336 LHASSASCKFSNSMKAKPGGFSATQTEF 253
+ S CKF S A P G SAT EF
Sbjct: 138 IDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 262
+++VG L IKK + E F ++G + +V
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENV 194
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 331
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 332 CS 337
C+
Sbjct: 417 CA 418
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 331
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 332 CS 337
C+
Sbjct: 417 CA 418
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 331
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 332 CS 337
C+
Sbjct: 417 CA 418
>At4g17660.1 68417.m02639 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 388
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 327 SSASCKFSNSMKAKPGGF-SATQTEFSFPYLSNSRS 223
S A+C+FS +K GGF S + + P + +S S
Sbjct: 85 SDATCEFSRKLKIGEGGFGSVYKATINNPTVGDSHS 120
>At3g62930.1 68416.m07069 glutaredoxin family protein contains
glutaredoxin domain, INTERPRO:IPR002109
Length = 102
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -2
Query: 327 SSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRV 172
S +SC S+S++ GF A T + SN + L+ P+ V
Sbjct: 17 SKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMGCKPSVPAV 68
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKL 253
T+++VG L +DL R F+++G++
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQV 38
>At1g47900.1 68414.m05334 expressed protein
Length = 1054
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 312 KFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFL 208
K S+ K+ PGG+S+T +EFS + + FL
Sbjct: 372 KVSSPCKS-PGGYSSTGSEFSLDNAQKFQKENEFL 405
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 331
++V L + I+ D+ F G++ V + +N G + F+EF + EAE A
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKA 303
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
T V GL + L + F + +L P GF FI FE+ +A+ A
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKA 123
>At5g39980.1 68418.m04848 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 678
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 240 LSNSRSRSSFLIPSTRPPTYTRVP 169
+++S S S L+P TRP YT +P
Sbjct: 5 IASSSSLSLPLLPLTRPHIYTSIP 28
>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
similarity to peflin [Homo sapiens] GI:6015440; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 354
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 309 FSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 166
+S+ P G S T + ++ PY ++ SS P+ +Y PP
Sbjct: 28 YSSGGNNPPYGSSTTSSPYAVPYGASKPQSSSSSAPTYGSSSYGAPPP 75
>At4g20800.1 68417.m03019 FAD-binding domain-containing protein
similar to SP|P93479 Reticuline oxidase precursor (EC
1.5.3.9) (Berberine-bridge-forming enzyme) {Papaver
somniferum}; contains Pfam profile PF01565: FAD binding
domain
Length = 528
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 206 IKKEDLEREFDKYGKLNSVWVALNPPG 286
I KE++E+ + K N++W+ NP G
Sbjct: 380 IPKEEMEKIWKAMLKFNNMWMQWNPYG 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,991,706
Number of Sequences: 28952
Number of extensions: 122809
Number of successful extensions: 579
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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