Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0045
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76150.1 68414.m08843 maoC-like dehydratase domain-containing...    31   0.56 
At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containi...    29   1.3  
At5g48050.1 68418.m05937 hypothetical protein low similarity to ...    29   2.3  
At5g17910.1 68418.m02100 expressed protein                             28   4.0  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    27   9.2  
At3g17130.1 68416.m02186 invertase/pectin methylesterase inhibit...    27   9.2  
At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containi...    27   9.2  

>At1g76150.1 68414.m08843 maoC-like dehydratase domain-containing
           protein contains similarity to Swiss-Prot:P51659
           estradiol 17 beta-dehydrogenase 4 (17-beta-HSD 4)
           (17-beta-hydroxysteroid dehydrogenase 4) [Homo sapiens];
           contains Pfam profile PF01575: MaoC like domain
          Length = 309

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +3

Query: 33  LITGLCGMTFGF--VVSCVCDTDRTATYLALGSFLPMVL----LCGIIWPVEGMHLILQ 191
           ++ GLC + F    ++ CVC  D TA     G FL  V     L   +W +EG+ +I Q
Sbjct: 228 ILHGLCTLGFAIKAIIKCVCKGDPTAVKTISGRFLTTVFPGETLITEMW-LEGLRVIYQ 285


>At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 657

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 RNLQSLSDRCYREVGLSMYPLSTLDSYQP 303
           R LQ L  RC+ EV   MY   ++D + P
Sbjct: 517 RGLQKLPGRCWMEVRRKMYSFVSVDEFNP 545


>At5g48050.1 68418.m05937 hypothetical protein low similarity to
           copia-like polyprotein [Arabidopsis thaliana]
           GI:13872712
          Length = 369

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 280 STLDSYQPEFG*LFI*PQVFYYLNLRKANLRSEHTLYSVLILS 408
           +TL SY+  FG + I   +F  L+L K N      L+  L LS
Sbjct: 4   TTLSSYEKSFGIMQIRAYIFVTLDLNKLNYDVWRELFETLCLS 46


>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 74  HDETKSHSTQSSDQCEECD 18
           HDE KSHS++ SD  E+ D
Sbjct: 596 HDEEKSHSSEDSDFDEQAD 614


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 24   FLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISY 203
            F T I+ L  +  G +V  V      A+ L         +  G   P   MH+ L+W +Y
Sbjct: 1273 FFTFISILYSIYTGIMVISVSPNQEIASILNGVISTSWNVFSGFTIPRPRMHVWLRWFTY 1332

Query: 204  ILP 212
            + P
Sbjct: 1333 VCP 1335


>At3g17130.1 68416.m02186 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 122 AKSQVSSCSVGVTNTGHDETKS 57
           A+ Q  SC  G+TN G D+  S
Sbjct: 134 AEKQTDSCQKGITNAGADDESS 155


>At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat.  Gene
           continues on the 3' end of BAC F19G10 gb|AF000657 gene
           F19G10.21
          Length = 703

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 449 IYSTGLIRNMTAFRDNINTEYKVCSDLRLAFLKFK 345
           I S     ++   R+++ T Y  CSDLR AF+ F+
Sbjct: 347 IRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQ 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,716
Number of Sequences: 28952
Number of extensions: 229532
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)