Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0042
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica...    30   1.5  
At2g37360.1 68415.m04582 ABC transporter family protein                29   3.5  
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide...    28   6.1  
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide...    28   6.1  

>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P31244 DNA
           repair protein RAD16 {Saccharomyces cerevisiae};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 638

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 193 KVHDGLGVSPRERVVCFLSLFALTSS 116
           K+ DG+ V+PRE ++ FL L  L+S+
Sbjct: 368 KMSDGVRVAPRENLIMFLDLLKLSST 393


>At2g37360.1 68415.m04582 ABC transporter family protein 
          Length = 755

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 3   GALELVDPRAAGSSIQSISYINNRNRKLNVETAEKAIMEEVKANKERKQTTRSRGDTPSP 182
           G   LV+      + Q+ SY NN  R  NV + ++AI   +   K     T +     +P
Sbjct: 379 GTKPLVEFHKQWRAKQAPSYNNNNKRNTNVSSLKEAITASISRGKLVSGATNNNSSNLTP 438

Query: 183 S 185
           S
Sbjct: 439 S 439


>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 810

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +2

Query: 305 DRLENHEEAKRS-----RGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKV 469
           ++  +H EA+ +      G H   S+TS  +LH  E     D+  +K  SS+     T V
Sbjct: 364 EKCRDHNEAEMADFELFHGSHKEQSETSEVNLHGSEKGFLSDMTVSKDPSSEFNATDTPV 423

Query: 470 KETGPKRSLNLE 505
             T PK    L+
Sbjct: 424 TVT-PKTPSRLK 434


>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 809

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +2

Query: 305 DRLENHEEAKRS-----RGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKV 469
           ++  +H EA+ +      G H   S+TS  +LH  E     D+  +K  SS+     T V
Sbjct: 364 EKCRDHNEAEMADFELFHGSHKEQSETSEVNLHGSEKGFLSDMTVSKDPSSEFNATDTPV 423

Query: 470 KETGPKRSLNLE 505
             T PK    L+
Sbjct: 424 TVT-PKTPSRLK 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,039,457
Number of Sequences: 28952
Number of extensions: 185814
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)