Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0186
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59750.1 68418.m07489 riboflavin biosynthesis protein, putati...    33   0.19 
At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putati...    30   1.4  
At4g34660.1 68417.m04921 SH3 domain-containing protein 2 (SH3P2)...    29   2.4  
At3g08980.1 68416.m01049 signal peptidase I family protein simil...    29   3.1  
At4g28395.1 68417.m04064 lipid transfer protein, putative identi...    29   4.1  
At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)...    29   4.1  
At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)...    29   4.1  
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ...    28   5.5  
At4g32910.1 68417.m04683 expressed protein                             28   5.5  
At2g18710.1 68415.m02179 preprotein translocase secY subunit, ch...    28   7.2  
At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not full...    28   7.2  
At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not full...    28   7.2  
At4g16515.1 68417.m02499 expressed protein                             27   9.5  
At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot...    27   9.5  

>At5g59750.1 68418.m07489 riboflavin biosynthesis protein, putative
           similar to SP|P50855 Riboflavin biosynthesis protein
           ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25);
           3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
           synthase)] {Actinobacillus pleuropneumoniae}; contains
           Pfam profiles PF00925: GTP cyclohydrolase II, PF00926:
           3,4-dihydroxy-2-butanone 4-phosphate synthase
          Length = 509

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 488 DGPSLVVVEEGEEQRVLGGGHSLRAAHLQQRARTVVHRHVRL 363
           +G  +VV   G E R +G GH LRA +LQ      V  +V L
Sbjct: 385 EGRGVVVYLRGHEGRGIGLGHKLRAYNLQDEGHDTVQANVEL 426


>At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putative
           (RIBA) similar to SP|P47924 {Arabidopsis thaliana},
           SP|P51695 Riboflavin biosynthesis protein ribA
           [Includes: GTP cyclohydrolase II (EC 3.5.4.25);
           3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
           synthase)] {Bacillus amyloliquefaciens}; contains Pfam
           profiles PF00925: GTP cyclohydrolase II, PF00926:
           3,4-dihydroxy-2-butanone 4-phosphate synthase
          Length = 384

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 485 GPSLVVVEEGEEQRVLGGGHSLRAAHLQQRARTVVHRHVRL 363
           G  ++V   G E R +G GH LRA +LQ   R  V  +  L
Sbjct: 253 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEEL 293


>At4g34660.1 68417.m04921 SH3 domain-containing protein 2 (SH3P2)
           nearly identical to SH3 domain-containing protein 2
           [Arabidopsis thaliana] GI:16974678; contains Pfam
           profile PF00018: SH3 domain
          Length = 368

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 612 LYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGE 713
           L+ Y      ELSL+ G+ V V + T  GW  GE
Sbjct: 307 LFPYHGVTDVELSLSTGEYVVVRKVTGSGWAEGE 340


>At3g08980.1 68416.m01049 signal peptidase I family protein similar
           to SP|P46972 Mitochondrial inner membrane protease
           subunit 2 (EC 3.4.99.-) {Saccharomyces cerevisiae};
           contains Pfam profile PF00461: Signal peptidase I
          Length = 154

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 124 YISSTRSVLRAPSLHCW 74
           +ISS+R V+R P  HCW
Sbjct: 96  WISSSRDVIRVPEGHCW 112


>At4g28395.1 68417.m04064 lipid transfer protein, putative identical
           to anther-specific gene ATA7 [gi:2746339]; contains Pfam
           protease inhibitor/seed storage/LTP family domain
          Length = 180

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 39  CMHALATLNNYVQQCNEGARNTERVEEMYRLARVIEFPAGVRHPPDL 179
           C   +  LNN V+  + G+RN +   E  R+   IE      H P L
Sbjct: 94  CCRGVTHLNNVVKFTSPGSRNRQDSGETERVCLCIEIMGNANHLPFL 140


>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
           nearly identical to SH3 domain-containing protein 3
           [Arabidopsis thaliana] GI:16974680; contains Pfam
           profile PF00018: SH3 domain
          Length = 351

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 612 LYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGE 713
           ++ + AA   EL L +GD + V + +  GW  GE
Sbjct: 289 IHPFSAASEKELDLDKGDYIVVRKVSQTGWAEGE 322


>At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)
           nearly identical to SH3 domain-containing protein 1
           [Arabidopsis thaliana] GI:16974676; contains Pfam
           profile PF00018: SH3 domain
          Length = 439

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 612 LYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGE 713
           ++ + A  P ELSLA  D V V +    GW  GE
Sbjct: 374 VHPFDAQAPGELSLAVDDYVIVRQVAGTGWSEGE 407


>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 180

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 293 LLAEGQLQFVILPNQLRHLAGPDQPPHRPSVPARQG 186
           +L +G++++V+   Q   LA   QPP RPS P R G
Sbjct: 126 MLPDGRIRYVL---QQPGLAAMPQPPPRPSPPYRGG 158


>At4g32910.1 68417.m04683 expressed protein
          Length = 716

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 440 LGGGHSLRAAHLQQRARTVVHRHVRLLAFLLGDDEQVVEQE 318
           L G HSL    +Q +     H+ +RLL  +LG++ +VV  E
Sbjct: 377 LDGMHSLAQKCVQSKPVNTSHKLLRLLIGILGENTEVVLAE 417


>At2g18710.1 68415.m02179 preprotein translocase secY subunit,
           chloroplast (CpSecY) Identical to SP|Q38885 Preprotein
           translocase secY subunit, chloroplast precursor (CpSecY)
           {Arabidopsis thaliana}
          Length = 551

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = -2

Query: 451 SSACLVAATPSALHTSSSERGQWSTATYDSSPFFLVTTSRSLNRNTCRGTLWN 293
           SS+    A+ S L+  SS R + S++ Y  S FF V+T     RNTC+   WN
Sbjct: 11  SSSSSNFASLSRLNHKSSSRLR-SSSLYKGS-FFSVSTKT--RRNTCKAKSWN 59


>At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 230 PDQPPHRPSVPARQGGPQVG 171
           PDQ    P++P + GGPQ+G
Sbjct: 209 PDQRLGHPNIPYQSGGPQMG 228


>At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 230 PDQPPHRPSVPARQGGPQVG 171
           PDQ    P++P + GGPQ+G
Sbjct: 209 PDQRLGHPNIPYQSGGPQMG 228


>At4g16515.1 68417.m02499 expressed protein
          Length = 86

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 518 RLTAARHQHFDGPSLVVVEEGEEQRVLGG 432
           RL + +H H    SL V   GE +R LGG
Sbjct: 32  RLRSHKHHHHKVASLDVFNGGERRRALGG 60


>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
           contains Pfam profile PF00439: Bromodomain
          Length = 475

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 263 ILPNQLRHLAGPDQPPHRPSVPA 195
           I+   LRH    D PPHR S+ A
Sbjct: 356 IVTKSLRHYLTEDHPPHRSSITA 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,331
Number of Sequences: 28952
Number of extensions: 199300
Number of successful extensions: 795
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)