Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0169
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67880.1 68414.m07751 glycosyl transferase family 17 protein ...    30   1.4  
At5g48830.1 68418.m06041 expressed protein                             29   2.4  
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1...    29   3.1  
At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein bet...    28   7.2  
At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein bet...    28   7.2  

>At1g67880.1 68414.m07751 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 390

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 99  FCFMRVPLFNCTRKASNRFCYVLFADFLRPKENECQLCN 215
           FCF R+  F    KA + +  V FA +L PK  +  +C+
Sbjct: 295 FCFRRISEFVFKMKAYSHYDRVRFAHYLNPKRVQRVICS 333


>At5g48830.1 68418.m06041 expressed protein
          Length = 511

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 256 QVAVLLAGADENSALQSWHSFSLGRKKSANST 161
           QV   L G+D+  +L  W  F+LG+ K+A S+
Sbjct: 399 QVINNLDGSDDTESLSWWRKFTLGKTKAAPSS 430


>At4g16680.1 68417.m02519 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 883

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -3

Query: 297 DSTMLELLLSAMMFK*LCSWPVLTRTARCRAGTHFLWAAKNQQIVRNKSDLMLYE 133
           D  + ++++ +  +K  CS  ++T  A    G    +  KNQQ+  +K+ +  YE
Sbjct: 639 DPMLSKMIVGSEKYK--CSKEIITIAAMLSVGNSVFYRPKNQQVFADKARMDFYE 691


>At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           EMBL:AB017502
          Length = 624

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 557 NPAIISSKGIYQISFPGYY 501
           N  +I SKG++ I  PGYY
Sbjct: 241 NNTVIDSKGLFGIHMPGYY 259


>At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           EMBL:AB017502
          Length = 624

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 557 NPAIISSKGIYQISFPGYY 501
           N  +I SKG++ I  PGYY
Sbjct: 241 NNTVIDSKGLFGIHMPGYY 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,074,155
Number of Sequences: 28952
Number of extensions: 260285
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)