Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0164
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 37 0.013
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 35 0.040
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 34 0.070
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 34 0.070
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 34 0.092
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 32 0.37
At2g27510.1 68415.m03327 ferredoxin, putative similar to non-pho... 31 0.86
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored... 30 1.5
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 30 1.5
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 29 2.0
At1g60950.1 68414.m06861 ferredoxin, chloroplast (PETF) identica... 29 2.0
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 29 2.6
At1g10960.1 68414.m01258 ferredoxin, chloroplast, putative stron... 29 2.6
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 29 3.5
At1g66920.1 68414.m07605 serine/threonine protein kinase, putati... 29 3.5
At1g66910.1 68414.m07604 protein kinase, putative similar to rec... 29 3.5
At5g34860.1 68418.m04105 hypothetical protein 28 6.1
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 28 6.1
At3g44330.1 68416.m04763 expressed protein 28 6.1
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 6.1
At4g20860.1 68417.m03026 FAD-binding domain-containing protein s... 27 8.0
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 27 8.0
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 36.7 bits (81), Expect = 0.013
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Frame = +1
Query: 229 LYRMIISQLYYDGYQPIAATLAAAVHADPPCP-PSDRLLNVMMVGLQHEPDRKDRLAASN 405
L +I++ L + +A+ +A+A P +RLL ++ GL E + R +S+
Sbjct: 20 LNALIVAHLRHHNLSQVASAVASATMTPLNIEVPPNRLLELVAKGLAAENNGTLRGVSSS 79
Query: 406 A---------AEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQ 558
+ F + + +S P+ +E+ ++ HK R FS G
Sbjct: 80 VLLPSSYGSITTPRTASIDFSVNHAKGSSKTIPK---HESKTLSEHKSVVRCARFSPDGM 136
Query: 559 LVATGSVDASIKILDVGEDAREIS 630
ATG D SIK+ +V + + IS
Sbjct: 137 FFATGGADTSIKLFEVPKVKQMIS 160
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 35.1 bits (77), Expect = 0.040
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 439 DLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVGE 612
DL + SS+A ++ T T + ++C + SH G LVA G D+SIK+ D+ +
Sbjct: 328 DLRNRVQLSSVAMPSVSFYTFVNTHNGLNC--SSISHDGSLVAGGFSDSSIKVWDMAK 383
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 34.3 bits (75), Expect = 0.070
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 505 VTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVGEDAR 621
V +HK SCRA F GQ + T S D SI DV A+
Sbjct: 47 VRAHKESCRAVRFIDDGQRIVTASADCSILATDVETGAQ 85
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 34.3 bits (75), Expect = 0.070
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 508 TSHKMSCRAGAFSHCGQLVATGSVDASIKILDV 606
T H+ +C A F G+ +A+GS DA++KI D+
Sbjct: 97 TGHRSNCSAVEFHPFGEFLASGSSDANLKIWDI 129
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 33.9 bits (74), Expect = 0.092
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 490 YETAYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVGEDAREIS 630
+E+ ++ HK R FS G ATG D SIK+ +V + + IS
Sbjct: 22 HESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMIS 68
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 499 AYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILD 603
A + HK S AFS+ GQL+A+G +D ++I D
Sbjct: 107 AELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFD 141
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 508 TSHKMSCRAGAFSHCGQLVATGSVDASI 591
+ H ++ G F+ G+L+ TGS DAS+
Sbjct: 194 SGHNLNVTCGDFTPDGKLICTGSDDASL 221
>At2g27510.1 68415.m03327 ferredoxin, putative similar to
non-photosynthetic ferredoxin from Citrus sinensis
[GI:1360725], Ferredoxin, root R-B2 from Raphanus
sativus [SP|P14937]; contains Pfam profile PF00111
2Fe-2S iron-sulfur cluster binding domain
Length = 155
Score = 30.7 bits (66), Expect = 0.86
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +1
Query: 418 LLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQLVATGSVDAS 588
LLG G + E+E+ + A E A V SCRAGA S C + +G+VD S
Sbjct: 65 LLGPDGQEDEFEVQDDQYILDAA--EEAGVDL-PYSCRAGACSTCAGQIVSGNVDQS 118
>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 582
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 400 SNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSH 516
S L GTT FD++Y++ ++ +P T+ T V H
Sbjct: 151 SKEGSSLKGTTEFDMDYDILILAVGAKPNTFNTPGVEEH 189
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 508 TSHKMSCRAGAFSHCGQLVATGSVDASIKILD 603
T H+ +C A F G+ +A+GS D ++++ D
Sbjct: 46 TGHRSNCSAVEFHPFGEFLASGSSDTNLRVWD 77
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 343 NVMMVGLQHEPDRKDRLAASNAAEHLLGTTGFDLEYEMDASS-LAPEPATYETAYVTSHK 519
+V V L + R ++ H ++G EY+ + L ++ ++ T H
Sbjct: 147 SVTGVALSDDDSRGFSVSKDGTILHWDVSSGKSDEYKWPSDEVLKSHGLKFQESWYTRHN 206
Query: 520 MSCRAGAFSHCGQLVATGSVDASIKILDV 606
A A S G+ +ATG VD + + D+
Sbjct: 207 KQSLALAVSSDGRYLATGGVDCHVHLWDI 235
>At1g60950.1 68414.m06861 ferredoxin, chloroplast (PETF) identical
to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from
[Arabidopsis thaliana]
Length = 148
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 523 SCRAGAFSHCGQLVATGSVDAS 588
SCRAG+ S C V +GSVD S
Sbjct: 90 SCRAGSCSSCAGKVVSGSVDQS 111
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 511 SHKMSCRAGAFSHCGQLVATGSVDASIKILD--VGEDAREISS 633
SH + A F + G ++ +GS D S+KI D V E RE S
Sbjct: 82 SHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQREFRS 124
>At1g10960.1 68414.m01258 ferredoxin, chloroplast, putative strong
similarity to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972]
from [Arabidopsis thaliana]
Length = 148
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 523 SCRAGAFSHCGQLVATGSVDAS 588
SCRAG+ S C V +GS+D S
Sbjct: 90 SCRAGSCSSCAGKVVSGSIDQS 111
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 514 HKMSCRAGAFSHCGQLVATGSVDASIKI--LDVGEDAREISSRG 639
HK+ S G+L+ TGS D ++KI LD G+ + I + G
Sbjct: 581 HKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHG 624
>At1g66920.1 68414.m07605 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 609
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 455 WTLPPWPLSRPRMRR 499
W + PWPL RP M R
Sbjct: 552 WCIQPWPLDRPAMNR 566
>At1g66910.1 68414.m07604 protein kinase, putative similar to
receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 666
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 455 WTLPPWPLSRPRMRR 499
W + PWPL RP M R
Sbjct: 602 WCIQPWPLDRPAMNR 616
>At5g34860.1 68418.m04105 hypothetical protein
Length = 394
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +2
Query: 383 KIGWLHRMLP--SIFWAQPVLTWSTKWTLPPWPLSRPRMRRHT*LRTRCP 526
K+G L RM P SIFWA V WP R RTRCP
Sbjct: 28 KVGDLSRMAPQFSIFWAHAV----------HWPCIRATFSHSVLCRTRCP 67
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 326 PATGCSMS*WWVYSMSQTGKIGWLH 400
P + S WW Y + Q+ I W+H
Sbjct: 211 PVSCKKASIWWTYLLDQSRSISWIH 235
>At3g44330.1 68416.m04763 expressed protein
Length = 565
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 388 RLAASNAAEHLLGTTGFDLEYEMDASSLAPEP 483
+L A + A+H+ G G D++ D SSLA P
Sbjct: 418 KLVAESLAKHIYGHQGKDIKIFADDSSLAVNP 449
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 499 PSHTWPAQGPGRKRPFRTPSQNRLCPKDARQHSMQP 392
P+ P P R RP P++ R P AR + +P
Sbjct: 546 PARARPLPPPARARPMPPPARARPLPPPARSYDRRP 581
>At4g20860.1 68417.m03026 FAD-binding domain-containing protein
simlar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 530
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -1
Query: 623 SRASSPTSKILIL--ASTLPVATSCPQ*LKAPARQDILCEVTYAVSYVAGSGAREEASIS 450
S +SSP S L L S P+ P+ ++ +Q ILC V SG + +S
Sbjct: 62 SESSSPNSSFLNLNFTSLKPILIVKPK-SESEIKQSILCSRKLGVQVRTMSGGHDYEGLS 120
Query: 449 YSKSKPVV 426
Y P +
Sbjct: 121 YLSLSPFI 128
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 499 AYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVGEDAR 621
A V +HK A +++ G AT S D ++KI V DAR
Sbjct: 690 AKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDAR 730
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,847
Number of Sequences: 28952
Number of extensions: 284617
Number of successful extensions: 752
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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