Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0128
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 283 9e-77
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 277 6e-75
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 277 6e-75
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 277 6e-75
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 277 6e-75
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 274 2e-74
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 58 4e-09
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.3
At3g01450.1 68416.m00069 expressed protein 29 3.3
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.3
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.7
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 7.6
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 283 bits (693), Expect = 9e-77
Identities = 125/154 (81%), Positives = 146/154 (94%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 340
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 341 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 520
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 521 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 194
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 277 bits (678), Expect = 6e-75
Identities = 125/154 (81%), Positives = 142/154 (92%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 340
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 341 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 520
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 521 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 277 bits (678), Expect = 6e-75
Identities = 125/154 (81%), Positives = 142/154 (92%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 340
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 341 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 520
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 521 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 277 bits (678), Expect = 6e-75
Identities = 125/154 (81%), Positives = 142/154 (92%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 340
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 341 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 520
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 521 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 277 bits (678), Expect = 6e-75
Identities = 125/154 (81%), Positives = 142/154 (92%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 340
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 341 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 520
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 521 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 274 bits (673), Expect = 2e-74
Identities = 123/154 (79%), Positives = 142/154 (92%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 340
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 341 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 520
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 521 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A V
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 203
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 58.4 bits (135), Expect = 4e-09
Identities = 31/103 (30%), Positives = 58/103 (56%)
Frame = +2
Query: 305 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 484
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 485 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVS 613
V + K T P + G G+ V L PA GTG+++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIA 244
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 513 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 334
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 333 CTGMIFRTSSFR 298
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 534 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 355
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 354 CPARVCF 334
A CF
Sbjct: 218 AKASTCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 371 AFVAIGDNNGHIGLGVKCSKE 433
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 527 HTVPCKVTGKCGSVTVRL 580
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 3 LSEPIVQQWRTLLQP 47
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,676,809
Number of Sequences: 28952
Number of extensions: 290225
Number of successful extensions: 804
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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