Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0121
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23590.1 68416.m02967 expressed protein 39 0.004
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 30 1.8
At2g09900.1 68415.m01028 hypothetical protein 29 4.2
At1g09350.1 68414.m01046 galactinol synthase, putative contains ... 29 4.2
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to... 28 7.4
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to... 28 7.4
At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt... 28 7.4
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt... 28 7.4
At1g27090.1 68414.m03302 glycine-rich protein 28 7.4
At4g32630.1 68417.m04645 hypothetical protein 27 9.8
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 27 9.8
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to... 27 9.8
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to... 27 9.8
>At3g23590.1 68416.m02967 expressed protein
Length = 1309
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = -1
Query: 329 DEFPHLTVVWAVHLQCAPHCSTNSLGMTHG-PVHPAIEDHAQSLLKLLVPLGAGKGAMIP 153
D FP L V + H +C +T S G+THG PVH +E +LL + G + P
Sbjct: 761 DSFPKLKVWYRQHQRCI--AATLS-GLTHGSPVHQTVE----ALLNMTFGKVRGSQTLNP 813
Query: 152 E*LCQSEHVGRSSIATHCHVHFPTWDGILTLPWL*NA 42
S G +S ++ FP WD + +P++ +A
Sbjct: 814 VNSGTSSSSGAASEDSNIRPEFPAWDILKAVPYVVDA 850
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 122 CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL- 298
CL +++ IILG +H L+ + L + PR++ +D+ P+S VG+ DV+
Sbjct: 888 CLDMKS--IILGKYHYVLYFLVLAM------QPRMMLTVDQSLKPISVPVRVGQAVDVVG 939
Query: 299 ----PTPLSNVETRPSP 337
P ++ +T +P
Sbjct: 940 QAGRPKTITGFQTHSTP 956
>At2g09900.1 68415.m01028 hypothetical protein
Length = 175
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 305 VWAVHLQCA----PHCSTNSLGMTHGPVHPAIEDHAQSLL 198
V +HL C PHCST +T P+ ++D QSLL
Sbjct: 92 VECLHLHCQTTTRPHCSTWKSSITITPLDCILDDKLQSLL 131
>At1g09350.1 68414.m01046 galactinol synthase, putative contains
Pfam profile: PF01501 glycosyl transferase family 8
Length = 334
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 129 CRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVSS 28
C QK+ H P++LP +L+ A V++C++ S
Sbjct: 299 CGQKEDVHRKPKTLPQFFTDLSEADVLQCAKAPS 332
>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 305
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 29 ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 172
EL+ H +A + G ++ +WL CL++ GT++L W LF
Sbjct: 97 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 143
>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 29 ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 172
EL+ H +A + G ++ +WL CL++ GT++L W LF
Sbjct: 157 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 203
>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
synthase, putative similar to fatty acid elongase
3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
thaliana]
Length = 459
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 380 YHDADVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCLQIFD 508
+HD V +G + +++ Y R KP YL+ F C Q D
Sbjct: 29 HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTD 72
>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
synthase, putative similar to GI:4091810; contains Pfam
profile PF02797: Chalcone and stilbene synthases,
C-terminal domain
Length = 466
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 380 YHDADVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCLQIFD 508
+HD V +G + +++ Y R KP YL+ F C Q D
Sbjct: 29 HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTD 72
>At1g27090.1 68414.m03302 glycine-rich protein
Length = 420
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 289 RCTAHTTVKCGNSSQPILSTCFTS 360
RC H + NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223
>At4g32630.1 68417.m04645 hypothetical protein
Length = 531
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 248 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSL 376
+SP ++ ++ G +G V+P N+ T+ + + PSD S+
Sbjct: 361 TSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPSDFSM 403
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +2
Query: 221 RLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVG 400
++L L S V+S VG T D++ T S+ R S+ ++ S H+L H A+V
Sbjct: 255 QILSTLTGHSKKVTSIKFVGDT-DLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHSAEVR 313
Query: 401 AMVTVGT 421
A+ T
Sbjct: 314 AVTVHAT 320
>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 318
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 74 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 172
H ++ + WL CL++ GT++L W LF
Sbjct: 131 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 162
>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 74 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 172
H ++ + WL CL++ GT++L W LF
Sbjct: 178 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,852
Number of Sequences: 28952
Number of extensions: 335616
Number of successful extensions: 999
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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