Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120162.Seq
         (813 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    32   0.39 
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar...    30   1.6  
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative...    29   3.7  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    29   4.9  
At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to ...    29   4.9  
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    29   4.9  
At1g49560.1 68414.m05557 myb family transcription factor contain...    29   4.9  
At1g42710.1 68414.m04932 hypothetical protein                          28   6.4  
At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl...    28   8.5  

>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
 Frame = +2

Query: 497 FKRNIFHKQKSKRDLNSLGALFATKQGL---LKILMRLNFDNKSNALLHLQTEGERDDLR 667
           F   + + +  KR     G +FA   GL   L +L  + FD   NA     TE   D   
Sbjct: 243 FLNTLTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEG 302

Query: 668 DKIESVLKHVKKLNTNSEKFMVTHETFKNDVGTGLS 775
           DKIE   K  KK         VT +  K D   G++
Sbjct: 303 DKIE---KKGKKRGRGKSSESVTRKKLKTDDVVGMN 335


>At5g03990.1 68418.m00379 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 302

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = +3

Query: 288 DYKKYHINVQQWSH-----IVKWDSFKCNTHSFKYRYVHN 392
           D+   + N   W H        WD   CN +SF Y+ V N
Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKVEN 246


>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
           strong similarity to gi:4467359
          Length = 1116

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 497 FKRNIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 622
           F + +FH+ K++ D  S       K G LK L +  FD K N
Sbjct: 356 FFKKLFHESKNEDDKVSNAVDDEEKDGFLKKLFKEKFDEKRN 397


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 614 KSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGTG 769
           K    L  + E ER+  R+KIE    H K+L  ++++ MV  +T K   G G
Sbjct: 183 KDRLKLEKEREIEREREREKIEREKSHEKQLG-DADREMVIDQTDKEIAGDG 233


>At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 263

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 557 LFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSE 721
           + AT  G+L++++   + NK +         +R+D  DK ++ L+ V  ++ NS+
Sbjct: 197 MVATPLGILQLILYFKYKNKKDLAPTTMVITKRNDHDDKNKATLEFVVDVDRNSD 251


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 722 FRCLYSVFLHVLKQIQFCRANHHARLQFEGAATRCF 615
           FR  Y + +H  +QI + R+N    L+F+G+ + C+
Sbjct: 141 FRAPYQL-IHNHQQIAYSRSNSGVNLKFDGSGSSCY 175


>At1g49560.1 68414.m05557 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 333

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 632 HLQTEG-ERDDLRDKIESVLKHVKKLNTNSEK 724
           H+Q EG   D+++  ++    H++K N+N+EK
Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEK 257


>At1g42710.1 68414.m04932 hypothetical protein
          Length = 206

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 611 NKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFM-VTH--ETFKNDVGTGLSSL 781
           NK N L  ++  GE++D  +++  V + V K  T  E+F+ V H  ET    V + +  L
Sbjct: 101 NKGNFLELVKYTGEQNDATEQMAVVFRFVDKSGTVKERFIEVVHVKETSSASVKSAIDDL 160


>At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly
           identical to acyl-activating enzyme 18 [Arabidopsis
           thaliana] GI:29893268; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501l; identical to cDNA
           acyl-activating enzyme 18 (At1g55320) GI: 29893267
          Length = 725

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 30  IQTWTRSRCSIGRTWTGIFFVTLTNK 107
           ++TW R+ C  G  WT I F   T +
Sbjct: 452 VKTWKRTNCMEGLNWTKIKFFATTGE 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,796,816
Number of Sequences: 28952
Number of extensions: 304990
Number of successful extensions: 866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)