Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120096.Seq
(822 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 130 8e-31
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 50 1e-06
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 50 1e-06
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 50 1e-06
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 31 0.92
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 29 2.8
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 29 2.8
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 2.8
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 29 2.8
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 29 2.8
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 29 2.8
At1g16270.1 68414.m01948 protein kinase family protein contains ... 29 2.8
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 29 4.9
At2g41290.1 68415.m05099 strictosidine synthase family protein s... 28 8.6
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 28 8.6
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 8.6
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 130 bits (315), Expect = 8e-31
Identities = 61/85 (71%), Positives = 74/85 (87%)
Frame = +3
Query: 255 ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGD 434
E GRV+S+GDGIA+VYGL IQA EMV F++G+KGMALNLE +NVG+VVFG D IKEGD
Sbjct: 299 EIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGD 358
Query: 435 IVKRTGAIVDVPVGEQILGRVVDAL 509
+VKRTG+IVDVP G+ +LGRVVDA+
Sbjct: 359 LVKRTGSIVDVPAGKAMLGRVVDAM 383
Score = 119 bits (287), Expect = 2e-27
Identities = 55/79 (69%), Positives = 66/79 (83%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
G PIDGKG + + RV +KAPGI+ R SV EPMQTG+KAV+SLVPIGRGQREL+IGDR
Sbjct: 384 GVPIDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDR 443
Query: 689 QTGKTALAIDTIINQQRFN 745
QTGKT +AIDTI+NQ++ N
Sbjct: 444 QTGKTTIAIDTILNQKQIN 462
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 769 LYCIYVAIGQKRSTVAQI 822
+YC+YVAIGQKRSTV Q+
Sbjct: 472 MYCVYVAIGQKRSTVGQL 489
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
G PID +G I T+ + + AP ++ + +E + TGIK V+ L P RG + + G
Sbjct: 174 GEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGA 233
Query: 689 QTGKTALAIDTIINQQRFNKG 751
GKT L ++ I N + + G
Sbjct: 234 GVGKTVLIMELINNVAKAHGG 254
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 393 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 509
+ + G + L++ G V TGA + VPVG LGR+++ L
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVL 173
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
G PID +G I T+ + + AP ++ + +E + TGIK V+ L P RG + + G
Sbjct: 177 GEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGA 236
Query: 689 QTGKTALAIDTIINQQRFNKG 751
GKT L ++ I N + + G
Sbjct: 237 GVGKTVLIMELINNVAKAHGG 257
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 393 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 509
+ + G + L++ G V TGA + VPVG LGR+++ L
Sbjct: 139 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVL 176
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
G PID +G I T+ + + AP ++ + +E + TGIK V+ L P RG + + G
Sbjct: 174 GEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGA 233
Query: 689 QTGKTALAIDTIINQQRFNKG 751
GKT L ++ I N + + G
Sbjct: 234 GVGKTVLIMELINNVAKAHGG 254
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 393 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 509
+ + G + L++ G V TGA + VPVG LGR+++ L
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVL 173
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 95 GACLMLLPRCQRWRCPQWPWHLANYMSQPPTKLPRSPP-SSKRGSLEPRPR 244
G+ ++ +PR +R W A ++ PP +P PP R + P PR
Sbjct: 495 GSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPR 545
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQR 667
G PID PI ++ + + + R E +QTGI ++ + I RGQ+
Sbjct: 109 GKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 161
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQR 667
G PID PI ++ + + + R E +QTGI ++ + I RGQ+
Sbjct: 109 GKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 161
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 396 VVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVV 500
V +G D +I DI+ TG++ VP G ++ G+ V
Sbjct: 207 VKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTV 241
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQR 667
G PID PI ++ + + + R E +QTGI ++ + I RGQ+
Sbjct: 108 GKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQR 667
G PID PI ++ + + + R E +QTGI ++ + I RGQ+
Sbjct: 108 GKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQR 667
G PID PI ++ + + + R E +QTGI ++ + I RGQ+
Sbjct: 108 GKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 425 LDKLVITKYYHTHIVRFQVKGHSLEA 348
L + V+ YY TH+V++Q+ G L+A
Sbjct: 205 LRQKVLEIYYRTHVVKYQLPGEDLDA 230
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 333 PSPQPGCSSSHKHERYHHQCSRH 265
PSP P S H H +HH H
Sbjct: 321 PSPSPSPHSKHHHHHHHHHHHHH 343
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 95 GACLMLLPRCQRWRCPQWPWHLANYMSQPPTKLPRSPP-SSKRGSLEPRPR 244
G+ ++ PR +++ W ++ PP LP PP R P PR
Sbjct: 548 GSAIIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPR 598
>At2g41290.1 68415.m05099 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]; contains strictosidine synthase
domain PF03088
Length = 376
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 330 SPQPGCSSSHKHERYHHQCSR 268
S + GC H+H+R H C R
Sbjct: 91 SAREGCEGPHEHQRTEHVCGR 111
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 488 KDLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVR 378
KDL S + L+ I F D+L++ + H H+++
Sbjct: 363 KDLYSCSKGNTKSQHLETIEFEDRLLVNSFSHIHVMK 399
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -1
Query: 396 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSS---SHKHERYHH 280
P P P P P L PP+P P + HKH+R+HH
Sbjct: 148 PAPVSPPPVQAPSPISL---PPAPAPAPTKHKRKHKHKRHHH 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,803
Number of Sequences: 28952
Number of extensions: 409748
Number of successful extensions: 1261
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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