Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120082.Seq
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03510.1 68415.m00311 band 7 family protein contains Pfam pro...    34   0.12 
At1g50880.1 68414.m05721 F-box family protein contains Pfam PF00...    32   0.46 
At5g64610.1 68418.m08119 histone acetyltransferase, putative sim...    31   1.1  
At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / x...    28   5.7  
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At4g29180.1 68417.m04175 leucine-rich repeat protein kinase, put...    28   7.6  
At3g26210.1 68416.m03270 cytochrome P450 71B23, putative (CYP71B...    28   7.6  
At3g62320.1 68416.m07001 hypothetical protein                          27   10.0 
At2g37540.1 68415.m04604 short-chain dehydrogenase/reductase (SD...    27   10.0 

>At2g03510.1 68415.m00311 band 7 family protein contains Pfam
           profile PF01145: SPFH domain / Band 7 family
          Length = 356

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +3

Query: 30  VAVINMDHGNFMIEKEISYSINFSQDLLYKILNSYI---VPNYSLAQQYFDLYDENGFRT 200
           + V+N    +F+ +  ++Y +N+    +Y  ++  I     ++SL Q Y D++D+   R 
Sbjct: 113 IEVVNRLRKDFVYDTLLNYGVNYDNTWIYDKIHHEINQFCSSHSLQQVYIDIFDQIDERM 172

Query: 201 RIPIQSACNNIISSVK 248
           +  +Q+ C      ++
Sbjct: 173 KDALQADCTRYAPGIE 188


>At1g50880.1 68414.m05721 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 279

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +2

Query: 488 SKLLTLLKMETLHRRRCKTRKWAAMKFWPAYVSNM 592
           SK+L  L  +++ R RC +++W+++   P ++SNM
Sbjct: 31  SKILAKLPAKSVLRARCVSKQWSSISTDPYFISNM 65


>At5g64610.1 68418.m08119 histone acetyltransferase, putative
           similar to histone acetyltransferase [Homo sapiens]
           gi|8317213|gb|AAF72665
          Length = 445

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +2

Query: 245 EKDYSKHKKFVYWPKDTNALVPLVWRESK--EIKLPYKTLSHNLSKIIKVYVYQHDKIEI 418
           E D SK ++    P +    V   WR+ K   +K+  +  ++N       Y   + +   
Sbjct: 46  ESDASKKRRMGVLPLEVGTRVMCQWRDGKYHPVKVIERRKNYNGGHNDYEYYVHYTEFNR 105

Query: 419 KF-EHVYFSKSDIDLFDSTMANKISKLLTLLKMETLHRRR 535
           +  E +   + D+D  +  +  K+   +T LKM T H++R
Sbjct: 106 RLDEWIKLEQLDLDSVECALDEKVEDKVTSLKM-TRHQKR 144


>At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR9) identical to xyloglucan
           endotransglycosylase GI:4218963 from [Arabidopsis
           thaliana]
          Length = 287

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -1

Query: 530 SDEAFPFSTKSAVWISCSPS-----WNQINQCHFSKNIHVQI*FQFY 405
           +D++    T S+ W++C P+     W  +N   + K + VQ  F  Y
Sbjct: 222 NDQSSCSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIY 268


>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger); weak similarity to
           interaptin (GI:3549261) [Dictyostelium discoideum] weak
           similarity to Axoneme-associated protein mst101(2)
           (Swiss-Prot:Q08696) [Drosophila hydei]
          Length = 711

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 176 VRRKRLSHSYTYSERLQ*HNIKREKDYSKHKKFVYWPKDTNALVPLVWRESKEIKLPYKT 355
           +R +R     + SE L+      +K+    KK V W K    L   +  E ++IK  YKT
Sbjct: 469 IRAEREGSKLSASESLKACMEASKKEKKCLKKLVAWEKQILKLQDEITAEKEKIKALYKT 528

Query: 356 LS 361
           L+
Sbjct: 529 LA 530


>At4g29180.1 68417.m04175 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 911

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 111 LYKILNSYIVPNYS--LAQQYFDLYDENGFRTRIPIQSACNNIISSV 245
           LY I  S++  NY    A   FDLY    F T + +++A  N+I  +
Sbjct: 106 LYLIRASFMYGNYDGKNALPEFDLYVNVNFWTSVKLRNASENVIKEI 152


>At3g26210.1 68416.m03270 cytochrome P450 71B23, putative (CYP71B23)
           Identical to Cytochrome P450 71B23
           (SP:Q9LTM0)[Arabidopsis thaliana];contains Pfam profile:
           PF00067 cytochrome P450
          Length = 501

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 718 LSINVVSGTNGDMFCASVNASMSAIMWHIT--FSXXXXXXXRQIHIRDVCGPKFHR 557
           L+ + + G   D+F A VN S + I+W +T            Q  +R V G K  R
Sbjct: 288 LTTDHIKGIISDIFLAGVNTSATTILWAMTELIRNPRVMKKVQDEVRTVLGEKRDR 343


>At3g62320.1 68416.m07001 hypothetical protein
          Length = 171

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 591 IFETYAGQNFIAAHLRVLQRLR*SVSIFNKVSSLDILFAIVESNKSMSLFEK---YTCSN 421
           I E   GQN +   L  +Q  +  VS+ N ++  D  F  V  NK++ + +     TC N
Sbjct: 66  ILELSDGQNCLIIPLPYVQGNKLPVSLTNFLNLPDFTFTGVGINKALKMLKSECGLTCKN 125

Query: 420 LISI 409
            + I
Sbjct: 126 AVDI 129


>At2g37540.1 68415.m04604 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 321

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 170 RFVRRKRLSHSYTYSERLQ*HNIKREKDYSKHKKF 274
           R V    ++H+YTYSE ++   I     YS+ + +
Sbjct: 168 RIVNLSSIAHTYTYSEGIKFQGINDPAGYSERRAY 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,282,768
Number of Sequences: 28952
Number of extensions: 294262
Number of successful extensions: 828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)