Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120078.Seq
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   108   2e-24
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   105   1e-23
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    46   1e-05
At2g16100.1 68415.m01846 hypothetical protein                          29   2.2  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    27   8.9  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  108 bits (260), Expect = 2e-24
 Identities = 49/84 (58%), Positives = 56/84 (66%)
 Frame = +1

Query: 4   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 184 FHFRKNKNFCPVLNLDKLWTLVSD 255
           FH  +NK FCP++NLDKLW+LV +
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPE 84


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  105 bits (253), Expect = 1e-23
 Identities = 48/84 (57%), Positives = 54/84 (64%)
 Frame = +1

Query: 4   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 184 FHFRKNKNFCPVLNLDKLWTLVSD 255
           FH  +NK FCP++NLDKLW+LV +
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPE 84


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +1

Query: 4   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 177
           M TS+KKTR LR HVS                       H R    +  PG  G   +GM
Sbjct: 1   MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39

Query: 178 RNFHFRKNKNFCPVLNLDKLWTLV 249
           R FH  +NK +C ++NLDKLW++V
Sbjct: 40  RYFHKLRNKFYCQIVNLDKLWSMV 63


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 APSQNQHGQVPSWILWQTW 173
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 120 PSQNQHGQVPSWILWQTWYEKFPL-*KEQEFLSSFELR*ALDISL*QTRLKYASAPDGKV 296
           P   +  Q+  W+LW+ W  +  L  + +EF +   LR A D  L + R++  +   G  
Sbjct: 351 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED-DLEEWRIRTEAESCGTK 409

Query: 297 PVIN 308
           P +N
Sbjct: 410 PQVN 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,470,795
Number of Sequences: 28952
Number of extensions: 185045
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)