Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120070X.Seq
         (534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03660.1 68417.m00501 hypothetical protein similar to A. thal...    29   1.9  
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)...    28   3.4  
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    28   4.5  
At1g44900.1 68414.m05144 DNA replication licensing factor, putat...    27   7.9  

>At4g03660.1 68417.m00501 hypothetical protein similar to A.
           thaliana hypothetical protein T6P5.8, GenBank accession
           number AC005970
          Length = 100

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 9   WLLRLAWLSRQHHPPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGF 185
           W + + +LS  +HPP+ HG   +   H +  S    L I    +   +  Q S+L+  F
Sbjct: 16  WKINVKFLSICNHPPKSHGEITTMILHDEKTSSIRVLRIGNMSRMQGVWCQISRLLRNF 74


>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
           identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
           4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
           thaliana}
          Length = 702

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 508 TFVGRLYPDMGKVEACDGNC*WRFPLGEPLWRLGGW 401
           TF     P        DG+C W   L   L+R+ GW
Sbjct: 13  TFSSIFTPSSVSTAVVDGSCHWSPSLSSSLYRIDGW 48


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 407 WMVLARVSTKLVKAMLEE*GIKILHELGIYLIWVKLKPVTEIADGGFH 264
           W  L  V   +V ++  E  +K L    IYL W+    +    DGG H
Sbjct: 263 WRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCFEDGGHH 310


>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
           similar to DNA replication licensing factor MCM2 from
           {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 928

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 9   WLLRLAWLSRQHHPPRRHGGSPSGN 83
           W  R +  SR   PPR +GG P GN
Sbjct: 139 WNYRPSKRSRTTVPPRGNGGDPDGN 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,922
Number of Sequences: 28952
Number of extensions: 221683
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)