Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120067.Seq
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger) fa... 37 0.018
At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger) fa... 35 0.071
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 33 0.29
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa... 33 0.29
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 32 0.50
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 31 0.87
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ... 31 0.87
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 31 0.87
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-... 31 0.87
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 30 1.5
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 30 1.5
At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger) fa... 29 2.7
At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containi... 29 2.7
At1g72200.1 68414.m08348 zinc finger (C3HC4-type RING finger) fa... 29 2.7
At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa... 29 2.7
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 29 3.5
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 4.6
At4g11370.1 68417.m01833 zinc finger (C3HC4-type RING finger) fa... 29 4.6
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ... 29 4.6
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 29 4.6
At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger) fa... 28 6.1
At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger) fa... 28 6.1
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 28 6.1
>At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 625 ECNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACGHRI 774
EC +C +E+ DE ++ +CC + + C +W+ T + CP C H I
Sbjct: 147 ECTICLEELCHDEESIETHDCCH--VFHKLC--LWRWIRTKSSCPLCRHPI 193
>At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 390
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 625 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACGHRIN 777
EC+VC D L+ C +A + C+ W HA CP C +R+N
Sbjct: 123 ECSVCLSKFEDVEILRLLPKCRHAF-HIGCIDQW--LEQHATCPLCRNRVN 170
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Frame = +1
Query: 565 ETINKTVKVMNLFVDNSVLYE----CNVCKEISTDERFLKPKECCEYAICNACCVTM--- 723
E +N+ V+ L + NS+ E C +C E + LK C + CN+C +
Sbjct: 206 ENLNEDQPVLKLMLPNSIELEYDLTCAICLETVFNPYALK----CGHIFCNSCACSAASV 261
Query: 724 -----WKTATTHAKCPAC 762
K A H+KCP C
Sbjct: 262 LIFQGIKAAPRHSKCPIC 279
>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 235
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 625 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPAC 762
EC+VC + TD L+ C++A + C+ W H CP C
Sbjct: 141 ECSVCLMVFTDSDELRQLSECKHAF-HVLCIETW--LKDHPNCPIC 183
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 583 VKVMNLFVDNSVLYECNVCK---EISTDERFLK-PKECCEYAICNACCVTM 723
+K+ N N Y C +C+ E T+ F PK+ + CNACC T+
Sbjct: 540 LKICNGKEANDQSYWCEICEGKIEEGTERAFYNTPKKDTSFYKCNACCTTL 590
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +1
Query: 628 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 750
C +C+E +++ C C+Y IC C +K H K
Sbjct: 478 CQICQEDGDGNNYIRKLNCMECKYIICFRCATLPYKAKYKHDK 520
>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 767
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 610 NSVLYECNVC-KEISTDERFLKPKECCEYAICNACCVTM 723
++++Y C C KEI+++ERF K C EY CCVT+
Sbjct: 648 STMMYWCEACEKEINSEERFYK---CDEY-----CCVTL 678
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +1
Query: 628 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 750
C +C+E +++ C C+Y IC C +K H K
Sbjct: 400 CQICQEDGDGNNYIRKLNCMECKYIICFRCATLPYKAKYKHDK 442
>At1g71980.1 68414.m08320 protease-associated zinc finger
(C3HC4-type RING finger) family protein identical to
ReMembR-H2 protein JR702 [Arabidopsis thaliana]
gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
protease-associated (PA) domain and Pfam domain,
PF00097: Zinc finger, C3HC4 type (RING finger);
identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
cds GI:6942148
Length = 448
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 607 DNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPAC 762
DN+ + C +C E T L+ CC +A CV W T + CP C
Sbjct: 225 DNTTAFTCAICLEDYTVGDKLRLLPCCHK--FHAACVDSWLT-SWRTFCPVC 273
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/67 (22%), Positives = 26/67 (38%)
Frame = +1
Query: 571 INKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAK 750
+ K K + L + + C +C R +CC + C C+ W + ++
Sbjct: 394 VKKGEKKVELVKRDVIKNVCGICLSEEDMRRLKGTLDCCSHYFC-FTCIMEW--SKVESR 450
Query: 751 CPACGHR 771
CP C R
Sbjct: 451 CPLCKQR 457
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 628 CNVCKEISTDERF-LKPKEC--CEYAICNACCVTMWKTATTHAK 750
C++C+E S DE F K C C++ IC C +K H K
Sbjct: 502 CHICQE-SKDESFSCKKLNCIECDFVICFKCATLPYKARYQHDK 544
>At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 568 TINKTVKVMNLFVDNSVLY--ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATT 741
T+ ++KV + V+ +C+VC +E L+ C++A + C+ W +
Sbjct: 32 TVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAF-HLYCIDTW--LRS 88
Query: 742 HAKCPAC 762
H CP C
Sbjct: 89 HTNCPLC 95
>At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 576
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 239 LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLL-SFCASGR 84
LV + + + +CK GRT A+ L +L G K N V + LL C GR
Sbjct: 246 LVSYNVLLTGFCKEGRTDDAMALFRELPAKG--FKANVVSYNILLRCLCCDGR 296
>At1g72200.1 68414.m08348 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 404
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 625 ECNVCK-EISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPAC 762
EC+VC E DE +CC + + C+ W +H CP C
Sbjct: 143 ECSVCLNEFEDDETLRLIPKCCH--VFHPGCIDAW--LRSHTTCPLC 185
>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 219
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 625 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACGH 768
EC +C E +K C + + C+ W ++H+ CP C H
Sbjct: 130 ECAICLSEFVAEERVKLLPTCHHGF-HVRCIDKW--LSSHSSCPTCRH 174
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 622 YECNVCKEISTDERFLKPKECCEYAICNAC 711
+ CN CK T R L+ CEY+IC C
Sbjct: 450 FRCNGCKRGLTKNR-LQCSTLCEYSICYEC 478
>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 296
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 628 CNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACGHRIN 777
C +C E T+ R C++ C A C+ W ++ CP C R +
Sbjct: 39 CPICLENLTERRSAAVITVCKHGYCLA-CIRKW--SSFKRNCPLCNTRFD 85
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 619 LYECNVCKEISTDERFLKPKEC--CEYAICNAC 711
L E CK T+ LKP C CEYA+C C
Sbjct: 389 LEETKQCKACGTE--ILKPLSCLVCEYALCIRC 419
>At4g11370.1 68417.m01833 zinc finger (C3HC4-type RING finger)
family protein strong similarity to RING-H2 finger
protein RHA1a [Arabidopsis thaliana] GI:3790554;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 159
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 628 CNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACGHR 771
C VC + +D++ + +C + + C+ W KCP C HR
Sbjct: 86 CTVCLSDFESDDKVRQLPKCGH--VFHHYCLDRWIVDYNKMKCPVCRHR 132
>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
subunit-related contains similarity to Swiss-Prot:P80387
5'-AMP-activated protein kinase, beta-1 subunit (AMPK
beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
Length = 591
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 746 ACVVAVFHMVTQHALHIAYS 687
ACV+A H +T +LH AYS
Sbjct: 399 ACVIAYLHWMTDTSLHAAYS 418
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +1
Query: 541 CLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVT 720
C L E L + L+ D L C +CK+ S + + CEY++C C
Sbjct: 334 CALITEPLVYQGHMHPLFLLWDDTESLISCQMCKKKSYYSQLFCLE--CEYSLCLRCVTF 391
Query: 721 MWKTATTH 744
+K H
Sbjct: 392 PYKVRYKH 399
>At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 628 CNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACGH 768
C +C EI E + + CE+ C C+ W + CP C H
Sbjct: 46 CAICLSEIPLQETAMV--KGCEHTYC-VTCILRWASCKESPTCPQCKH 90
>At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 386
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 625 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACGHRIN 777
+C+VC L+ C +A + C+ W HA CP C R++
Sbjct: 76 DCSVCLSKFESVEILRLLPKCRHAF-HIGCIDQW--LEQHATCPLCRDRVS 123
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 628 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 750
C +C++ +T FL+ C C+Y IC C ++ H K
Sbjct: 509 CQICQQKAT---FLRKLNCIECDYVICFKCATLPYEAKYKHDK 548
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,997,807
Number of Sequences: 28952
Number of extensions: 352937
Number of successful extensions: 1121
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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