Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120063.Seq
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing...    29   4.6  
At3g12420.1 68416.m01547 hypothetical protein                          29   4.6  
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ...    28   6.1  

>At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing
           protein weak similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 707

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = +2

Query: 83  YFTNDFAPYLMRFDDNDYNSNRFSDHMSETGYYMFVVKKSEVKPFEIIFAKYVSNVVSNI 262
           YF   +A  ++  + +   +  F   MS    ++F +  + V P  ++   Y+SN+  + 
Sbjct: 526 YFMLKYAMEILLSESSVVTTYYFGWSMSSVSIFLFCLGLT-VLPVNLVVGSYISNMFEDR 584

Query: 263 QTTITW*IIVCL 298
           Q  +   I+VC+
Sbjct: 585 QILLASEIMVCI 596


>At3g12420.1 68416.m01547 hypothetical protein
          Length = 308

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 116 RFDDNDYNSNRFSDHMSETGYY 181
           R+D ND   NR+ DH +E GYY
Sbjct: 117 RYDANDLPPNRYYDHQTE-GYY 137


>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
           Mus musculus; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 457

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 95  DFAPYLMRFDDNDYNSNRFSDHMSETGY 178
           DF P++ RFDD   +S R+  HM    Y
Sbjct: 90  DF-PFVPRFDDESRDSRRYPSHMEVLAY 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,538,900
Number of Sequences: 28952
Number of extensions: 331359
Number of successful extensions: 855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)