Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120059.Seq
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   129   2e-30
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             129   2e-30
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   129   2e-30
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.78 
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical...    29   3.2  
At1g15780.1 68414.m01893 expressed protein                             29   3.2  
At5g16910.1 68418.m01982 cellulose synthase family protein simil...    29   4.2  
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ...    28   5.5  
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD...    28   5.5  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    28   5.5  
At4g17110.1 68417.m02577 expressed protein ; expression supporte...    28   7.3  
At1g10155.1 68414.m01145 hypothetical protein                          27   9.6  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  129 bits (312), Expect = 2e-30
 Identities = 58/86 (67%), Positives = 69/86 (80%)
 Frame = +3

Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
           AGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+D
Sbjct: 84  AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143

Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
           GRTIRYPDPLIK ND+I+LD+   K+
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEANKI 169



 Score =  112 bits (270), Expect = 2e-25
 Identities = 47/74 (63%), Positives = 63/74 (85%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +I++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FAT+L NV+ 
Sbjct: 168 KIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYT 227

Query: 686 IGKGTKAYISLPRG 727
           IGKGTK ++SLP+G
Sbjct: 228 IGKGTKPWVSLPKG 241



 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +1

Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
           + ++ I+ QR I+VDGKVRTD TYP
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYP 83


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  129 bits (311), Expect = 2e-30
 Identities = 58/86 (67%), Positives = 69/86 (80%)
 Frame = +3

Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
           AGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+D
Sbjct: 84  AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143

Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
           GRTIRYPDPLIK ND+I+LD+   K+
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKI 169



 Score =  112 bits (270), Expect = 2e-25
 Identities = 47/74 (63%), Positives = 63/74 (85%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +I++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FAT+L NV+ 
Sbjct: 168 KIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYT 227

Query: 686 IGKGTKAYISLPRG 727
           IGKGTK ++SLP+G
Sbjct: 228 IGKGTKPWVSLPKG 241



 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +1

Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
           + ++ I+ QR I+VDGKVRTD TYP
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYP 83


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  129 bits (311), Expect = 2e-30
 Identities = 58/86 (67%), Positives = 69/86 (80%)
 Frame = +3

Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
           AGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+D
Sbjct: 84  AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143

Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
           GRTIRYPDPLIK ND+I+LD+   K+
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKI 169



 Score =  112 bits (270), Expect = 2e-25
 Identities = 47/74 (63%), Positives = 63/74 (85%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +I++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FAT+L NV+ 
Sbjct: 168 KIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYT 227

Query: 686 IGKGTKAYISLPRG 727
           IGKGTK ++SLP+G
Sbjct: 228 IGKGTKPWVSLPKG 241



 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +1

Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
           + ++ I+ QR I+VDGKVRTD TYP
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYP 83


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 132 KHSRNLWGPVDGLGAYTPPSLSNIHAL 52
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
           UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
           [Arabidopsis thaliana]; contains Pfam 00415: Regulator
           of chromosome condensation (RCC1)
          Length = 440

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 560 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TKLNNVFIIGKGTKAYISL 718
           G NL +   +  + R P    +V +     HT A T+ NNVF  G+GT   + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 724 ARQRDVRLRALADYEHVVQLRGEGVSRGVLDVHNVEG 614
           ARQ+  +L+ + D   +   +G  VSRG+   H+++G
Sbjct: 867 ARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSMQG 903


>At5g16910.1 68418.m01982 cellulose synthase family protein similar
           to gi:2827143 cellulose synthase catalytic subunit,
           Arabidopsis thaliana, gi:9622886 cellulose synthase-7
           from Zea mays
          Length = 1145

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 696 PLPIMNTLFNFVAKVCPVESLMCTMSKEPGCL 601
           PL   NT+ + +A   PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426


>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to Fzr1
           (GI:6463679){Homo sapiens}
          Length = 481

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -3

Query: 682 EHVVQLRGEGVSRGVLDVHNVEGAGMSLAGHD-----GAHTPQVTASRDHTQVPRLKLDE 518
           +H ++++ + VS+  L  H  E  G+  +  D     G +  Q+    +H+Q P LKL E
Sbjct: 281 QHDIRVQSDFVSK--LVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTE 338

Query: 517 VHNFVVAMSNWM--ESLTLISGSG 452
            H   V    W   +S  L SG G
Sbjct: 339 -HTAAVKAITWSPHQSSLLASGGG 361


>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
           similar to cellulose synthase catalytic subunit
           gi:2827143 from [Arabidopsis thaliana], cellulose
           synthase-7 (gi:9622886) from Zea mays; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 696 PLPIMNTLFNFVAKVCPVESLMCTMSKEPGCL 601
           PL   NT+ + +A   PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423


>At1g02730.1 68414.m00226 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-4 [gi:9622880]
           from Zea mays
          Length = 1181

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 696 PLPIMNTLFNFVAKVCPVESLMCTMSKEPGCL 601
           PL   NT+ + +A   PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447


>At4g17110.1 68417.m02577 expressed protein ; expression supported
           by MPSS
          Length = 335

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +3

Query: 483 IQLDIATTKLWTSSSLSRGTCV*-----SREAVTWGVWAPSCPA 599
           ++  I  +K+W+S   S+G C       S +     +W PSCPA
Sbjct: 136 VKHSINFSKIWSSERESKGRCSLCKKQDSEDGGVCTIWRPSCPA 179


>At1g10155.1 68414.m01145 hypothetical protein
          Length = 184

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 396 TGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKLWT 518
           TGP N+P     DGR   +  P + +N   +L     ++WT
Sbjct: 129 TGPVNIPDET--DGRFEIFVSPKVAINQDTKLQFGLYEVWT 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,508,120
Number of Sequences: 28952
Number of extensions: 388133
Number of successful extensions: 1069
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)