Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120045.Seq
         (818 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (...    29   3.7  
At1g15150.1 68414.m01811 MATE efflux family protein similar to r...    29   4.9  
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu...    28   6.5  
At1g50990.1 68414.m05732 protein kinase-related low similarity t...    28   6.5  
At1g08660.2 68414.m00962 glycosyl transferase family 29 protein ...    28   8.6  
At1g08660.1 68414.m00961 glycosyl transferase family 29 protein ...    28   8.6  

>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
           (IRX3) identical to gi:5230423
          Length = 1026

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 245 HGIIGILTGKSPELGMFSK-REDFKDKYGIENLQLYKFVTKLMTVSMVKIIYNLMRYKIL 421
           HG +G      PE+G+  + R+    K  I + ++  +  +++ V+ + I+   +RY++L
Sbjct: 200 HGNLGPEPDDDPEMGLIDEARQPLSRKVPIASSKINPY--RMVIVARLVILAVFLRYRLL 257

Query: 422 NNAKGLLQLMFNYVYVEYY 478
           N     L L    V  E +
Sbjct: 258 NPVHDALGLWLTSVICEIW 276


>At1g15150.1 68414.m01811 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 487

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -1

Query: 161 FKSLSITFSVNIIVGVAAFDRISLGMAARINANVHHVSSVAYCA 30
           F++LSIT+S+ + +  AA  RIS  + A  N+   H+  V Y A
Sbjct: 298 FETLSITYSIPLAIAAAASTRISNELGAG-NSRAAHI--VVYAA 338


>At1g80010.1 68414.m09362 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 696

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 618 WSVQNRRNSN--VICKKCQTFKIVRKTHATRRVSTR 719
           W+ +N +     V+C  CQ FK+++  H +RR  TR
Sbjct: 99  WTKRNSKEKRGAVLCCNCQGFKLLKDAH-SRRKETR 133


>At1g50990.1 68414.m05732 protein kinase-related low similarity to
           SP|Q06548|APKA_ARATH Protein kinase APK1A Arabidopsis
           thaliana; contains Pfam profile: PF00069: Eukaryotic
           protein kinase domain; contains non-consensus (GC)
           splice site at intron 6
          Length = 507

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 733 FQQWKQRLQDDCTTCQNRQSA 795
           FQQW Q+++D C T Q   SA
Sbjct: 393 FQQWAQQIKDVCNTRQQGDSA 413


>At1g08660.2 68414.m00962 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 347

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 370 HQLSYKLVQLQVFNTIFVFKIFTFTEHAQF 281
           HQ   KL  LQ+   + VF +F FT  + F
Sbjct: 4   HQAGRKLPLLQLLGCVAVFSVFVFTIQSSF 33


>At1g08660.1 68414.m00961 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 474

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 370 HQLSYKLVQLQVFNTIFVFKIFTFTEHAQF 281
           HQ   KL  LQ+   + VF +F FT  + F
Sbjct: 4   HQAGRKLPLLQLLGCVAVFSVFVFTIQSSF 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,133
Number of Sequences: 28952
Number of extensions: 328961
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)