Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060060.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam...    29   2.9  
At3g60120.1 68416.m06713 glycosyl hydrolase family 1 protein con...    29   3.8  
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    28   5.0  
At1g09020.1 68414.m01006 protein kinase, putative similar to pro...    28   5.0  
At4g17030.1 68417.m02569 expansin-related identical to SWISS-PRO...    28   6.6  

>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 21  IYNYYAKYNEVHDVYGESYHH-HRIVQEYLSESYVNDMSCIERDVT 155
           ++ +YA+  + H   G+ Y   +++V E     YV D SCI +D++
Sbjct: 377 VHIFYAE-GKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDIS 421


>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1423

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
 Frame = -2

Query: 444  SHEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSGLNAHADGN-HRVDLLQHFTDVIVDA 268
            SHE+  A +++     HV   FS   V  +   + +  H D N    + +Q   D+ +D+
Sbjct: 1228 SHEILAAKRDHAARPLHVRNPFSPPEVSSDSATTSIKGHPDSNISGSEAIQRSDDITIDS 1287

Query: 267  RRFAVLNQWERLLMESPASIILTASSKVQLPIFKRA*RSRPALCTTYRLRTILIGIPELY 88
                       LLM++      +A+SK +   F R    R  L      R   I  P + 
Sbjct: 1288 TVTDKRRGKGPLLMDTDQKTDDSATSKSR---FSRKLTERQILSGKTVPRKHCIVSPSVS 1344

Query: 87   GDGD 76
             DGD
Sbjct: 1345 EDGD 1348


>At3g60120.1 68416.m06713 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; similar to anther-specific protein ATA27
           (GI:2746341)  [Arabidopsis thaliana]
          Length = 534

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -2

Query: 432 FKAAQNNLQAAQHVLRNFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVDARRFAV 253
           ++ A+N     + V   F  K  +R    +   A    NH  D +Q   D+ +DA RF++
Sbjct: 28  YEGARNEAPRGESVWDTFVRKYPERNCYSNADQAIEFYNHYKDDIQRMKDINMDAFRFSI 87

Query: 252 LNQWERL 232
              W R+
Sbjct: 88  --SWPRI 92


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 494 ASLLGLNTLAMCSSFPFL--MKCSKRPKIICKQPN 396
           A+LLGL T+ + +SFP L    C+ +  + C  PN
Sbjct: 132 ATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166


>At1g09020.1 68414.m01006 protein kinase, putative similar to
           protein kinase AKINbetagamma-2 [Zea mays] GI:11139548,
           AKINbetagamma-1 [Zea mays] GI:11139546; contains Pfam
           profile PF00571: CBS domain
          Length = 487

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +1

Query: 157 LCAFEDRQLHL*RSGQDDRRGRFHQKPFPLVQHGETTGIDDNVRKVLEQIDAVVPV 324
           + A+++ + H+  S Q D  GR +  P PLVQ G    + D   K+L+   A VPV
Sbjct: 239 IAAWKEGKAHI--SRQYDGSGRPY--PRPLVQVGPYDNLKDVALKILQNKVAAVPV 290


>At4g17030.1 68417.m02569 expansin-related identical to
           SWISS-PROT:O23547 expansin-related protein 1 precursor
           (At-EXPR1)[Arabidopsis thaliana]; related to expansins,
           http://www.bio.psu.edu/expansins/
          Length = 250

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 33  YAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIE 143
           YA YN V+ ++ +SY+ H +    L    VND+  +E
Sbjct: 146 YAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVE 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,386,865
Number of Sequences: 28952
Number of extensions: 293832
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)