Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021135
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    90   2e-18
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    88   6e-18
At3g18640.1 68416.m02368 zinc finger protein-related contains si...    29   2.3  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.3  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    29   4.1  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   5.4  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   7.1  
At5g01010.1 68418.m00001 expressed protein                             28   7.1  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    28   7.1  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    27   9.4  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    27   9.4  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
 Frame = +3

Query: 36  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 209
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 210 KEAGHQTSAESWGTG 254
           K+AGHQTSAESWGTG
Sbjct: 61  KKAGHQTSAESWGTG 75



 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 37/45 (82%), Positives = 39/45 (86%)
 Frame = +2

Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
           G   AV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 73  GTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +3

Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
           S   + + K   A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKGPL+++  +
Sbjct: 160 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTE 219

Query: 684 -QGLTRAFRNIP 716
              + +AFRN+P
Sbjct: 220 GSKIVKAFRNLP 231



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +1

Query: 421 SVAATGVPALVQARGHIIEKIPELPLVVA 507
           ++AAT VPALV ARGH IE +PE+PLVV+
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMPLVVS 160


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 43/72 (59%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
 Frame = +3

Query: 45  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 218
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 219 GHQTSAESWGTG 254
           GHQTSAESWGTG
Sbjct: 65  GHQTSAESWGTG 76



 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 37/45 (82%), Positives = 39/45 (86%)
 Frame = +2

Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
           G   AV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 74  GTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +3

Query: 504 SRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 683
           S   + + K   A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKGPL++F  +
Sbjct: 161 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTE 220

Query: 684 QG-LTRAFRNIP 716
              + +AFRN+P
Sbjct: 221 GAKIVKAFRNLP 232



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +1

Query: 421 SVAATGVPALVQARGHIIEKIPELPLVVA 507
           ++AAT VPALV ARGH IE +PE+PLVV+
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMPLVVS 161


>At3g18640.1 68416.m02368 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 676

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 346 VRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIPELPL 498
           V+P++A          P    GLG S  A GVPA+  ++   +E+I E+ L
Sbjct: 488 VQPNQATTQSNVVSSNPNQLWGLGMSTGAEGVPAVTASKISNVEEIQEVSL 538


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 60  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 206
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 338 HHDTCYRRHPDRTYEYHHHGHAEFGRQHSS 249
           HHD  +  H D  +++ HH H      H S
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHHHS 340


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 111 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 206
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 111 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGVL 260
           P+PF  K+P +PD++   H  +  NS+  +C+    G   S   WG   L
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL-YSLGRMKSV--WGEDAL 902


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 338 HHDTCYRRHPDRTYEYHHHGHAEF 267
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At5g01010.1 68418.m00001 expressed protein
          Length = 409

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 236 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 105
           +TG+  +L+ + VG+P+VL    ++ I Q+   DG +E +RE  G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 114 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 1
           G W+H   SH+  ++  L VG+ +      Y+S + P++Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 350 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHSST 246
           R++ H    + +H D +  E+HHH H    R+H  +
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDS 770


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 350 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHSST 246
           R++ H    + +H D +  E+HHH H    R+H  +
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDS 770


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,622
Number of Sequences: 28952
Number of extensions: 290796
Number of successful extensions: 965
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)