Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021124
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50030.1 68416.m05470 hypothetical protein                          30   1.3  
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom...    29   3.9  
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At1g72720.1 68414.m08409 expressed protein                             28   5.2  
At5g11280.1 68418.m01317 expressed protein                             27   9.0  
At4g05640.1 68417.m00880 hypothetical protein                          27   9.0  

>At3g50030.1 68416.m05470 hypothetical protein 
          Length = 501

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +1

Query: 298 SIDKRAIAFSIWTGRSMLLYKPIDTSHVQKRCYGMLVARAIRGVLKIRYLVLGGAVGGGM 477
           S +K   A S++    + L   I T+ + K  Y   +    RG LK +  +L   +GG  
Sbjct: 155 SHEKSFEAVSLFEEEIVKLAMEIATNCL-KNVYKSFLGVEDRGRLKYQSDLLTRGLGGFE 213

Query: 478 TLNKKYAEWKVVFQIWA 528
           T N+K  EW +  Q W+
Sbjct: 214 TENQKAEEWGIQLQCWS 230


>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 607

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 341 RPVHIENAIARLSMLTHDVFLNDDLTRL 258
           R VH+ N+ +  SML   + LNDDL RL
Sbjct: 227 RVVHLVNSTSDESMLCQGLALNDDLQRL 254


>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 721

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 176 HNLNRFRKGNHVIHIRSL*YVTKNINVYVYNAINCIFIKKSRI 48
           H +N + K   + + R+  Y T+  NV+ YN I   + K S+I
Sbjct: 48  HFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKI 90


>At1g72720.1 68414.m08409 expressed protein 
          Length = 127

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 583 SVVVNLSHCSLSGSRSFNQPISGRPPSTRHISYSTS 476
           S + N  HC   G +S ++P + +PP     SYSTS
Sbjct: 14  SSITNKYHCFSHGEKSESEPTNQQPPVMMR-SYSTS 48


>At5g11280.1 68418.m01317 expressed protein
          Length = 209

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 403 LVARAIRGVLKIRYLVLGGAVGGGMTLNKKYAEWKVVFQIW 525
           L++  I  V  I+ L+  GAV  G+ +N  + +W+ V  I+
Sbjct: 53  LISSEIFPVPMIKALLYPGAVVNGLAINMTFPKWENVLDIY 93


>At4g05640.1 68417.m00880 hypothetical protein
          Length = 207

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 526 PISGRPPSTRHISYSTSCLHQRHHRELSNEFSTLL**PLLQAYHSIFSA 380
           P + RP +  H S   S +   HH   S   ST L  PL++ +HS  SA
Sbjct: 101 PDNTRPFTLPHHSTPRSSITSPHHHHHSTIHSTKLLDPLVEYHHSPPSA 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,470
Number of Sequences: 28952
Number of extensions: 324038
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)