Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021122
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   109   2e-24
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   109   2e-24
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    31   0.58 
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    30   1.3  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    29   2.3  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   3.1  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   3.1  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   5.4  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   7.2  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    28   7.2  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    27   9.5  
At1g11790.1 68414.m01353 prephenate dehydratase family protein s...    27   9.5  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/51 (90%), Positives = 48/51 (94%)
 Frame = +1

Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 408
           TSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 68  TSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118



 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 34/63 (53%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
 Frame = +2

Query: 74  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 247
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 248 GHQ 256
           GHQ
Sbjct: 65  GHQ 67



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/88 (30%), Positives = 41/88 (46%)
 Frame = +3

Query: 450 SVAATGVPALVQARGHIIEKFPSFPWL*PTKSKIINKTKQAVIFLRRLKAWSDILKVYKS 629
           ++AAT VPALV ARGH IE  P  P +    ++ + KT  A+  L+++ A+ D  K   S
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNS 192

Query: 630 QXXXXXXXXXXXXXXXXXXXPLIIFNKD 713
                               PL++F  +
Sbjct: 193 IGIRPGKGKMRNRRYISRKGPLVVFGTE 220


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/51 (90%), Positives = 48/51 (94%)
 Frame = +1

Query: 256 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 408
           TSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 67  TSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
 Frame = +2

Query: 65  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 238
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 239 KEAGHQ 256
           K+AGHQ
Sbjct: 61  KKAGHQ 66



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/60 (40%), Positives = 35/60 (58%)
 Frame = +3

Query: 450 SVAATGVPALVQARGHIIEKFPSFPWL*PTKSKIINKTKQAVIFLRRLKAWSDILKVYKS 629
           ++AAT VPALV ARGH IE  P  P +    ++ + KT  A+  L+++ A+ D  K   S
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNS 191


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +1

Query: 214 LEAALLREQGGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 384
           +  AL+R + G  PT AE   + + + ++P   G G    G+   G FGN   GG  F  
Sbjct: 76  MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134

Query: 385 TKPW 396
              W
Sbjct: 135 ISKW 138


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +2

Query: 89  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQPVLN 268
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+      + V  
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICIYALGRMRSVWG 408

Query: 269 HGVLDVLSPE 298
              LD   PE
Sbjct: 409 EDALD-FKPE 417


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 577 MTACLVLLIILDFVGYNQGKLGNFSIMCPLA*TSAGTPVAATLPPRPL 434
           M +C+VL  + +F GY    L   S++  +     G  +A TLP   L
Sbjct: 61  MVSCVVLAFVNNFFGYRSNPLTVSSVVAQIITLPLGKLMATTLPTTKL 108


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 379 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 260
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 379 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 260
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 367 HHDTCYRRHPDRTYEYHHHGHAEF 296
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 143 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 30
           G W+H   SH+  ++  L VG+ +      Y+S + P++Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 367 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 284
           HHD  +  H D  +++ HH H      H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338


>At1g11790.1 68414.m01353 prephenate dehydratase family protein
           similar to gi|2392772 and is a member of the PF|00800
           Prephenate dehydratase family. ESTs gb|T21562 and
           gb|T21062 come from this gene
          Length = 392

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 623 VHLKDIRPCLEAPQEDDSLFGLVDNLGLCRLQPREAREFFNNVSSS 486
           V  +DI+  L  PQ  D     ++NLG+ R+  ++       VSSS
Sbjct: 196 VKKEDIKCVLSHPQALDQCVNSLNNLGIQRISAKDTATAAQTVSSS 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,461,619
Number of Sequences: 28952
Number of extensions: 301008
Number of successful extensions: 949
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)