Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021109
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55990.1 68416.m06221 expressed protein contains Pfam profile...    31   0.71 
At5g17910.1 68418.m02100 expressed protein                             31   0.93 
At5g35810.1 68418.m04303 hypothetical protein                          29   2.8  
At1g11400.2 68414.m01310 expressed protein                             29   3.8  
At1g11400.1 68414.m01309 expressed protein                             29   3.8  
At5g27330.1 68418.m03263 expressed protein                             28   6.6  
At3g06670.1 68416.m00786 expressed protein                             28   8.7  
At1g71150.1 68414.m08210 expressed protein  ; expression support...    28   8.7  

>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
           PF03005: Arabidopsis proteins of unknown function
          Length = 487

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +2

Query: 44  SEKPASSEDKDTPIRQIMTI-IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKY 220
           + KP    D+ TPI +I T+ ++  I+N +  +  + +   +Q + K++    +  V+K 
Sbjct: 56  TSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQDSVKDVAEPVQEEVSKT 115

Query: 221 DEVAQTLEFA 250
           +EV +   FA
Sbjct: 116 EEVKKIELFA 125


>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 86  RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 244
           RQ+  + E K+ ++   +S  T   D +K   E N+D++  +AK D V+   E
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVSDNDE 576


>At5g35810.1 68418.m04303 hypothetical protein
          Length = 347

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
 Frame = -2

Query: 605 FFRFSINYGVEVFCSSCYLKVKTRLSFFI*FMLGVTSGYKSSKIFKSS-----SVNLAAP 441
           F  F   +  EVF  S  + + + ++  + F+  +TS Y  +  F+++      + L A 
Sbjct: 217 FPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEAS-FQTTLPTKLMLGLLAL 275

Query: 440 FVPFMKSVLASALPICIRQSRISKTSFILLVSAA*RTQASFLACFF 303
           FV  +  VLA    + + + +  K S ILLV  A  T  SF+   F
Sbjct: 276 FVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHF 321


>At1g11400.2 68414.m01310 expressed protein
          Length = 204

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 104 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 244
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L+
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELK 197


>At1g11400.1 68414.m01309 expressed protein
          Length = 204

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 104 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 244
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L+
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELK 197


>At5g27330.1 68418.m03263 expressed protein
          Length = 628

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 68  DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 199
           D++T IR +       IR LE  +   S++   RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +2

Query: 26  SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKV 205
           SA+N + EKPAS+  K+ P   +   +     +   R   L  Y D +         +K 
Sbjct: 672 SASNTQKEKPASNIQKEQPKPHLSNGVAASPTSSSPRSGGLVDYEDDEDDEDYKPPPRKQ 731

Query: 206 AVAKYDEVAQTL 241
             A  DE  + L
Sbjct: 732 PEASEDEEGELL 743


>At1g71150.1 68414.m08210 expressed protein  ; expression supported
           by MPSS
          Length = 351

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 32  ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 136
           ++ KS K +SSE      R++ ++IEH +  L+ R
Sbjct: 303 SDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,963,607
Number of Sequences: 28952
Number of extensions: 293468
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)