Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021054
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 101 4e-22
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 101 4e-22
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 101 4e-22
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 42 4e-04
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 41 7e-04
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 40 0.001
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 37 0.011
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.027
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 35 0.061
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.14
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.14
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.14
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 33 0.25
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 33 0.25
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 32 0.33
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 32 0.43
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 32 0.43
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 32 0.43
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 32 0.43
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 31 0.57
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.75
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 0.75
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 0.75
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.75
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 30 1.3
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 30 1.7
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 2.3
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 2.3
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 2.3
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 29 2.3
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 29 2.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.3
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 3.0
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 29 3.0
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 29 3.0
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 3.0
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 29 4.0
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 29 4.0
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 29 4.0
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 29 4.0
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 29 4.0
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 28 5.3
At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger) fa... 28 7.0
At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger) fa... 28 7.0
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 27 9.3
At5g32070.1 68418.m03689 hypothetical protein 27 9.3
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 27 9.3
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 27 9.3
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 27 9.3
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 27 9.3
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 27 9.3
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 27 9.3
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 27 9.3
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 101 bits (243), Expect = 4e-22
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 AFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 431
A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+
Sbjct: 26 ALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL- 84
Query: 432 DDGKWATTLVLLRINRAATCVKWSPMRTSLLSG 530
+ +W TLV+LR+NRAA CV+WSP G
Sbjct: 85 EGAEWVPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 61.3 bits (142), Expect = 6e-10
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2
Query: 509 ENKFAVGSGARLISICYFEKENNWWVSKHIKK 604
ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K
Sbjct: 111 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRK 142
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 613 STVTSIDWHPNNILLVAGSADFKVRVFSA*YQG 711
S+VTS+ WHPNN+LL S D K RVFS +G
Sbjct: 146 SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKG 178
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 228 CMEQG*KSNAFSPNNNEVHI----YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 395
C++ K N F+ + + Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 396 SVDRNAYVWT 425
S D V++
Sbjct: 164 STDGKCRVFS 173
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 101 bits (243), Expect = 4e-22
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 AFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 431
A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+
Sbjct: 26 ALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL- 84
Query: 432 DDGKWATTLVLLRINRAATCVKWSPMRTSLLSG 530
+ +W TLV+LR+NRAA CV+WSP G
Sbjct: 85 EGAEWVPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 61.3 bits (142), Expect = 6e-10
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2
Query: 509 ENKFAVGSGARLISICYFEKENNWWVSKHIKK 604
ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K
Sbjct: 111 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRK 142
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 613 STVTSIDWHPNNILLVAGSADFKVRVFSA*YQG 711
S+VTS+ WHPNN+LL S D K RVFS +G
Sbjct: 146 SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKG 178
Score = 31.1 bits (67), Expect = 0.75
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +3
Query: 228 CMEQG*KSNAFSPNNNEVHI----YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 395
C++ K N F+ + + Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 396 SVDRNAYVWT---QGDDGKWA 449
S D V++ +G D K+A
Sbjct: 164 STDGKCRVFSTFIKGVDTKYA 184
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 101 bits (243), Expect = 4e-22
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 AFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 431
A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+
Sbjct: 26 ALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL- 84
Query: 432 DDGKWATTLVLLRINRAATCVKWSPMRTSLLSG 530
+ +W TLV+LR+NRAA CV+WSP G
Sbjct: 85 EGAEWVPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 61.3 bits (142), Expect = 6e-10
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2
Query: 509 ENKFAVGSGARLISICYFEKENNWWVSKHIKK 604
ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K
Sbjct: 111 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRK 142
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 613 STVTSIDWHPNNILLVAGSADFKVRVFSA*YQG 711
S+VTS+ WHPNN+LL S D K RVFS +G
Sbjct: 146 SSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKG 178
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 228 CMEQG*KSNAFSPNNNEVHI----YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 395
C++ K N F+ + + Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 396 SVDRNAYVWT 425
S D V++
Sbjct: 164 STDGKCRVFS 173
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +3
Query: 285 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 464
I+K G++++ + L H+ V + W + + + TCS D++ ++W + ++ VL
Sbjct: 100 IWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVL 159
Query: 465 LRINRAATCVKWSPMRTSLLS 527
+ V+W P L S
Sbjct: 160 TGHTQDVKMVQWHPTMDVLFS 180
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 297 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV-WTQGDDGKWATTLVLLRI 473
EGN++ L H V + W P + + +CS D V W++ DDG++ L
Sbjct: 149 EGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGES 208
Query: 474 NRAATCVKWS 503
N + WS
Sbjct: 209 NNGHSSTVWS 218
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 294 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSV-DRNAYVWTQGDDGKWATTLV 461
KEGN W Q + +H + V I WAP+ + + C D N V++ DG W TT +
Sbjct: 86 KEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKI 145
Query: 462 LLRINRAATCVKWSP 506
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 294 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 464
KEG W+ T L + V + W+ N + + N VW + DG+W V+
Sbjct: 245 KEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV 300
Score = 31.5 bits (68), Expect = 0.57
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 270 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 431
++ V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIG 244
Query: 432 DDGKWATTLVLLRINRAATCVKWS 503
+G+ VL V WS
Sbjct: 245 KEGEQWEGTVLKDFKTPVWRVSWS 268
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +3
Query: 327 LVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 500
L H V + WA P ++ +CS D +W +G+ +W V + + W
Sbjct: 52 LTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAW 111
Query: 501 SPMRTSL 521
+P L
Sbjct: 112 APHELGL 118
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 294 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLV 461
KEGN W Q + +H V I WAP+ + + C S D N V+T DG W T+ +
Sbjct: 86 KEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRI 145
Query: 462 LLRINRAATCVKWSP 506
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 270 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 431
+N V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVG 244
Query: 432 DDGKWATTLVLLRINRAATCVKWS 503
+G+ VL V WS
Sbjct: 245 KEGEQWEGKVLKDFMTPVWRVSWS 268
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 312 KQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 485
+Q L H V + WA P I+ +CS D +W +G+ +W V +
Sbjct: 47 QQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSV 106
Query: 486 TCVKWSP 506
+ W+P
Sbjct: 107 NSIAWAP 113
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 294 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 446
KEG W + L + V + W+ N + + N VW + DG+W
Sbjct: 245 KEGEQW-EGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEW 294
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 440
H + + W+P++ R++T S D++A VW +DG
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDG 129
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 270 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
N E ++ +E K NN++ H R+ + W+PN + T S+D V+
Sbjct: 377 NREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATGSIDTCVIVY 426
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.9 bits (79), Expect = 0.027
Identities = 23/64 (35%), Positives = 29/64 (45%)
Frame = +3
Query: 339 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMRTS 518
DL+V +DW P NRIV+ S D VW K T + L TC +SP S
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQS 59
Query: 519 LLSG 530
+ G
Sbjct: 60 VACG 63
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 34.7 bits (76), Expect = 0.061
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 285 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 458
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 459 VLLRINRAATCVKWSPMRTSLLS 527
VL + V W P L S
Sbjct: 134 VLTGHSEDVKMVLWHPTMDVLFS 156
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 285 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLV 461
I +E +++ L H V + W P + + +CS D +W ++ +DG +
Sbjct: 121 IQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQT 180
Query: 462 LLRINRAATCVKWS 503
L +N + WS
Sbjct: 181 LSELNNGHSSTVWS 194
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 312 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 428
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMRT 515
H +V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQ 120
Query: 516 SLLSG 530
S+ G
Sbjct: 121 SVACG 125
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMRT 515
H +V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQ 120
Query: 516 SLLSG 530
S+ G
Sbjct: 121 SVACG 125
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 464
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +3
Query: 327 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 506
LV H V + ++ + + T S D A +W DD K L + V WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279
Query: 507 MRTSLLS 527
T LL+
Sbjct: 280 DDTKLLT 286
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMRT 515
H + W P ++ T S D+ +W+ +D + LVL + T V W+ +
Sbjct: 695 HKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLPPFGSSVTAVAWTGLDR 754
Query: 516 SLLSG 530
+ SG
Sbjct: 755 NEKSG 759
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 32.3 bits (70), Expect = 0.33
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 306 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
+WK L H V+ ++W+P+ + + + S+D ++W
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIW 145
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Frame = +3
Query: 270 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD----- 434
+N VHI+ T L H V G+ W P + I + S D+ +W D
Sbjct: 139 DNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAH 196
Query: 435 --DGKWATTL 458
DG WA +L
Sbjct: 197 RTDGHWAKSL 206
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 285 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 461
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 34 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 90
Query: 462 LLRINRAATCVKWSPM 509
L V W P+
Sbjct: 91 LDAHCHYVQGVAWDPL 106
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 285 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 461
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 462 LLRINRAATCVKWSPM 509
L V W P+
Sbjct: 150 LDAHCHYVQGVAWDPL 165
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 285 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 461
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 462 LLRINRAATCVKWSPM 509
L V W P+
Sbjct: 150 LDAHCHYVQGVAWDPL 165
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 321 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 500
+ LV H V G+ W+ + + + D VW ++ L L A + W
Sbjct: 292 SKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVW---NNHSQQPILKLTEHTAAVKAITW 348
Query: 501 SPMRTSLLS 527
SP ++SLL+
Sbjct: 349 SPHQSSLLA 357
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 31.5 bits (68), Expect = 0.57
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 503
HD + +DW P+ N ++ T S D V+ + + +G + A CV+WS
Sbjct: 325 HDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWS 384
Query: 504 PMRTSLLSGQELD 542
P ++S+ D
Sbjct: 385 PDKSSVFGSSAED 397
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 IDWHPN-NILLVAGSADFKVRVF 693
+DW+P+ N L++ GSAD VRVF
Sbjct: 332 VDWNPHDNNLILTGSADNTVRVF 354
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 619 VTSIDWHPNNILLVAGSADFKVRVF 693
V S+DWHP LLV+G D V+++
Sbjct: 271 VKSVDWHPTKSLLVSGGKDQLVKLW 295
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 506
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
Query: 507 MRTSLLS 527
+ +LL+
Sbjct: 325 FQANLLA 331
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 506
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
Query: 507 MRTSLLS 527
+ +LL+
Sbjct: 315 FQANLLA 321
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 300 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDD 437
G D+ +L H+ +V +D +++ I T S DR +WT G+D
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +3
Query: 312 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 491
K L EH + I ++P+ R+ T S D+ VW D K + + + T
Sbjct: 684 KPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDA--DNKGYSLRTFMGHSSMVTS 741
Query: 492 VKWSPMRTSLLSGQELD 542
+ + P++ L+ + D
Sbjct: 742 LDFHPIKDDLICSCDND 758
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 321 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 452
+ L H +V I + +T+ ++T S D+ +W +DG + +
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTS 301
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 312 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 491
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 492 VKWSPM 509
V+++P+
Sbjct: 402 VQFNPV 407
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 312 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 491
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 492 VKWSPM 509
V+++P+
Sbjct: 402 VQFNPV 407
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 29.5 bits (63), Expect = 2.3
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Frame = +3
Query: 177 NGTNVNFW*LMRADNMSCMEQ--------G*KSNAFSPNNNEVHIYKKEGNDWKQ-TNNL 329
+GT V W ++R N+ ME S+ S + + I +++ + + L
Sbjct: 230 SGT-VQIWDVLRCKNIRTMEGHRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKL 288
Query: 330 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---W 500
H + G+ W+ + + + D +VW Q +T +LR A VK W
Sbjct: 289 KGHKSEICGLKWSSDNRELASGGNDNKLFVWNQ------HSTQPVLRFCEHAAAVKAIAW 342
Query: 501 SPMRTSLLS 527
SP LL+
Sbjct: 343 SPHHFGLLA 351
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 321 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 449
+ L H +V + + +++ ++T S D+ +W DG +A
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYA 300
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 321 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 449
+ L H +V + + +++ ++T S D+ +W DG +A
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYA 300
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 333 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 458
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 548 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 333 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 458
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 333 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 458
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 333 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 458
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 333 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 458
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 434
+F+ ++ + IY + + + H V + W P + + +CS D A +W
Sbjct: 420 SFATSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIW---- 475
Query: 435 DGKWATTLVLLRIN-RAATCVKWSP 506
+ K +T + LR + + ++WSP
Sbjct: 476 NIKQSTFVHDLREHTKEIYTIRWSP 500
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 619 VTSIDWHPNNILLVAGSADFKVRVF 693
++ +DWHPN + GS+D VR++
Sbjct: 502 LSDVDWHPNCNYIATGSSDKTVRLW 526
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 357 IDWAPNTNRIVTCSVDRNAYVW 422
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 315 QTNNLVE-HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 491
QT ++E H V + ++ N + + S D+ A +W DG + L+ ++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 492 VKWSP 506
+ WSP
Sbjct: 325 ILWSP 329
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 285 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = +3
Query: 303 NDWKQTNNLVE----HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 470
ND + +++VE H V G+ W+ + N+ + D ++W + T L R
Sbjct: 236 NDVRIRSSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHR 295
Query: 471 INRAATCVK---WSPMRTSLLS 527
V+ W P + SLL+
Sbjct: 296 FEEHTAAVRALAWCPFQASLLA 317
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 619 VTSIDWHPNNILLVAGSADFKVR 687
+ S+D+HP+ LL GSAD V+
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVK 210
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 619 VTSIDWHPNNILLVAGSADFKVR 687
+ S+D+HP+ LL GSAD V+
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVK 210
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 619 VTSIDWHPNNILLVAGSADFKVR 687
+ S+D+HP+ LL GSAD V+
Sbjct: 281 IQSLDFHPHEFLLATGSADKTVK 303
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 610 RSTVTSIDWHPNNILLVAGSADFKVRVF 693
R +V + +HP+ LL GSAD ++R++
Sbjct: 17 RHSVMDVSFHPSKSLLFTGSADGELRIW 44
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +3
Query: 336 HDLRVMGIDWAPNT-NRIVTCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 503
HD + +DW P+ N I+T S D ++ + +G + A CV+WS
Sbjct: 336 HDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWS 395
Query: 504 PMRTSLLSGQELD 542
P ++S+ D
Sbjct: 396 PDKSSVFGSSAED 408
>At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 527 RQQTCSHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNT 381
++ C H FH RC V + SSCP L PD VN R T
Sbjct: 255 KEMPCKH--KFHI-RCIVPWLELHSSCPVCRYELPPDDETKVNPVRPRT 300
>At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 527 RQQTCSHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNT 381
++ C H FH RC V + SSCP L PD VN R T
Sbjct: 255 KEMPCKH--KFHI-RCIVPWLELHSSCPVCRYELPPDDETKVNPVRPRT 300
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 336 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG-KWATTLVLLRINRAATCVKWSPMR 512
H +V + W N ++ + SVD+ A +W G A L L + + W P
Sbjct: 19 HKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKH 78
Query: 513 TSLLS 527
+ L++
Sbjct: 79 SDLVA 83
>At5g32070.1 68418.m03689 hypothetical protein
Length = 339
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 249 SNAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNR 383
S S ++ I K+GN KQT N+V +++ + + P T+R
Sbjct: 294 SRVTSKKGLKILILDKDGNIQKQTTNIVFYEVLHSQLKFNPTTSR 338
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 330 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---W 500
V H V G+ W+ + ++ + D ++W + T L R V+ W
Sbjct: 233 VGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAW 292
Query: 501 SPMRTSLLS 527
P + SLL+
Sbjct: 293 CPFQASLLA 301
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 336 HDLRVMGIDWAPN-TNRIVTCSVDRNAYVW 422
HD V +DW+P+ ++ T S D +W
Sbjct: 380 HDFEVTAVDWSPSEIGKVATASDDFTVRLW 409
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 324 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
+L H L VM ID + + IVT S D+N +W
Sbjct: 577 SLYGHKLPVMCIDISSDGELIVTGSQDKNLKIW 609
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 303 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 431
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 303 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 431
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 303 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 431
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +3
Query: 312 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 491
K +L H ++ + W+ + +++ S+D+ +W D + T L L N TC
Sbjct: 497 KPVCSLKGHLDAILDLSWS-KSQLLLSSSMDKTVRLW----DIETKTCLKLFAHNDYVTC 551
Query: 492 VKWSPMRTSLLSGQELD 542
+++SP+ + LD
Sbjct: 552 IQFSPVDENYFLSGSLD 568
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,567,063
Number of Sequences: 28952
Number of extensions: 339798
Number of successful extensions: 1043
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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