Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021052
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19970.1 68416.m02527 expressed protein                             38   0.006
At2g31580.1 68415.m03858 expressed protein   contains Pfam profi...    29   2.7  
At4g14480.1 68417.m02233 protein kinase family protein contains ...    28   6.3  
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    28   8.3  

>At3g19970.1 68416.m02527 expressed protein
          Length = 434

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 14/44 (31%), Positives = 29/44 (65%)
 Frame = +3

Query: 504 KSRPLCIMINWLLARQKHVMKYATLYLEQGFDVLSVSCTPWQLM 635
           K+R + +++ WL ++QKH+ KYA  Y  +G+ V++ +    ++M
Sbjct: 160 KNRTVVVLLGWLGSKQKHLKKYADWYTSKGYHVITFTLPMNEIM 203


>At2g31580.1 68415.m03858 expressed protein   contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 567

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 304 YI*QWKNWYEEQRKIFAVSFSA-IMRSGSDGRLRAYA--HSQDITKNIQY 444
           Y+ +WK ++ +++ ++A SFS+ ++   S   L+AY     QD   N QY
Sbjct: 155 YVTKWKEFFPQRKLLYAPSFSSKVVSCASAEVLQAYLAWRQQDCHANNQY 204


>At4g14480.1 68417.m02233 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 487

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -2

Query: 462 DFLVANVLNVLRDVLGMSVRSKPTIATGAHDSRERNGEDXXXXXXXXXXXLNVCETNFLN 283
           DF+V NVL+ L +   M + S+  I +   D  E   ED            N  E +   
Sbjct: 300 DFVVKNVLHSLSNAEQMFMESQILIKSVGDDDEEEEEEDEEIVKNRRISGWNFREDDLQL 359

Query: 282 TPIF 271
           +P+F
Sbjct: 360 SPVF 363


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -1

Query: 664 ATSCDPFMGHISCHGVHDTESTSNPCSKYSVAYFITCFCRASSQLIIMQRGLLFAGPVS 488
           A S       +      +  S+S+  S  S+ Y +TC+ +    +     GL+  GP S
Sbjct: 110 AQSLGSIFSSVHLKSTREISSSSSSSSASSITYHVTCYTQQRMTISPSVHGLICYGPPS 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,521
Number of Sequences: 28952
Number of extensions: 322490
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)