Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0112
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11680.1 68416.m01432 expressed protein contains Pfam profile...    28   4.9  
At2g24680.1 68415.m02947 transcriptional factor B3 family protei...    28   6.5  
At2g45750.1 68415.m05691 dehydration-responsive family protein s...    27   8.6  
At2g38465.1 68415.m04724 expressed protein                             27   8.6  
At1g34340.1 68414.m04262 esterase/lipase/thioesterase family pro...    27   8.6  

>At3g11680.1 68416.m01432 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 488

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 338 LEAIFICPVYILGYI*KKLEKNVNYLRKY 424
           L +IFICPV+    + K +  N+N L KY
Sbjct: 198 LVSIFICPVWAGEDLHKMIANNINKLAKY 226


>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 851

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +3

Query: 519 PCVACKTLRSTTHRSQRRKCTKN 587
           P ++  + +ST+H+SQ+R+C+K+
Sbjct: 62  PMLSLVSTQSTSHKSQKRECSKH 84


>At2g45750.1 68415.m05691 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 631

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 450 P*IHETDISIPHCV*ALSLHFKIPCV-ACKTLRSTTHRSQ--RRKCTKNVDIL 599
           P + ET +S P C  ALS H   PC  A ++L+ +  R +  +R C +  +IL
Sbjct: 78  PPVTETAVSFPSCAAALSEH--TPCEDAKRSLKFSRERLEYRQRHCPEREEIL 128


>At2g38465.1 68415.m04724 expressed protein
          Length = 84

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 505 SDKA*TQCGIDISVSCIQGFPYKTCFFI 422
           SD+  T C + ++V+C +GF Y   FF+
Sbjct: 15  SDRVKTNC-LSMAVTCQEGFSYVKAFFV 41


>At1g34340.1 68414.m04262 esterase/lipase/thioesterase family
           protein similar to late embryogenesis abundant protein
           (EMB8) GI:1350544 SP|Q40863 from (Picea glauca);
           contains Interpro entry IPR000379
           esterase/lipase/thioesterase family
          Length = 530

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 569 TLRAMGR*PESFARYTWDLEV*RQSLDAVWY-*YIGFVYSRVPLQNMFFYIF 417
           TL+  GR PE         E+ RQ+  +VW+  YIG V S   L  +  YIF
Sbjct: 467 TLKQRGRKPEEDVTKKSFKELCRQTKQSVWWLGYIGMVTSFPLLGMLLNYIF 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,707
Number of Sequences: 28952
Number of extensions: 257418
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)