Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0101
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te...    53   1e-07
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi...    51   3e-07
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati...    27   7.6  
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati...    27   7.6  

>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
           tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
           similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
           sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 380

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 36/129 (27%), Positives = 51/129 (39%)
 Frame = +1

Query: 61  NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAGDXXXX 240
           +A Q+ +L+ FVE  K  P +LH P L FFK+YL SLG  +P      +D+    +    
Sbjct: 3   DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDYEDKAE--TK 60

Query: 241 XXXXXXXXXXXXXXXXXXXXLDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXA 420
                               LD   V+ PD  +  Q MGDP                  A
Sbjct: 61  PSFSPKHDDDDDDIMESDVELDNSDVVEPD-NEPPQPMGDPTAEVTDENRDDAQSEKSKA 119

Query: 421 MRAFSEQKY 447
           M A S+ ++
Sbjct: 120 MEAISDGRF 128


>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
           protein similar to Hsc70-interacting protein (Hip) from
           {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
           contains Pfam profile PF00515: tetratricopeptide repeat
           (TPR) domain
          Length = 441

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 21/43 (48%), Positives = 31/43 (72%)
 Frame = +1

Query: 61  NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT 189
           ++ +L +LK F++ CK+ P LL  P L+FF+DYL SLG  +PT
Sbjct: 2   DSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44


>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           very strong similarity to SP|P11574 Vacuolar ATP
           synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
           (Vacuolar proton pump B subunit) (V-ATPase 57 kDa
           subunit) {Arabidopsis thaliana}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 487

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 55  PYN--AEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAG 225
           P+N  A Q+ +    V+  +    LL H +   F     ++GV++ TA F  +DF   G
Sbjct: 171 PHNEIAAQICRQAGLVKRLEKSDNLLEHQEDDNFAIVFAAMGVNMETAQFFKRDFEENG 229


>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           very strong similarity to SP|P11574 Vacuolar ATP
           synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
           (Vacuolar proton pump B subunit) (V-ATPase 57 kDa
           subunit) {Arabidopsis thaliana}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 487

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 55  PYN--AEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAG 225
           P+N  A Q+ +    V+  +    LL H +   F     ++GV++ TA F  +DF   G
Sbjct: 171 PHNEIAAQICRQAGLVKRLEKSDNLLEHQEDDNFAIVFAAMGVNMETAQFFKRDFEENG 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,052,392
Number of Sequences: 28952
Number of extensions: 136421
Number of successful extensions: 305
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)