Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0100
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger) fa...    32   0.36 
At4g11890.3 68417.m01892 protein kinase family protein contains ...    31   0.63 
At4g11890.2 68417.m01891 protein kinase family protein contains ...    31   0.63 
At4g11890.1 68417.m01890 protein kinase family protein contains ...    31   0.63 
At3g09070.1 68416.m01066 glycine-rich protein similar to hypothe...    30   1.5  
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05...    30   1.5  
At3g56760.1 68416.m06313 calcium-dependent protein kinase, putat...    30   1.9  
At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR) domai...    29   2.5  
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M...    29   2.5  
At1g59312.1 68414.m06676 hypothetical protein                          28   5.9  
At1g58936.1 68414.m06664 hypothetical protein                          28   5.9  
At1g58643.1 68414.m06656 hypothetical protein                          28   5.9  

>At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 308

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 325 STSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQEREEPEK 465
           S    GFDD V  P+A+A   +  LD + + S P  V+++  EE ++
Sbjct: 88  SLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEEEDE 134


>At4g11890.3 68417.m01892 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 354

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 69  TVSIHFHHRLHTNLLILSSFSSKSVENLLSFC 164
           T SI    + H  L+ILS    K++ NLL FC
Sbjct: 72  TSSIRTERQFHNELIILSKLKHKNLINLLGFC 103


>At4g11890.2 68417.m01891 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 352

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 69  TVSIHFHHRLHTNLLILSSFSSKSVENLLSFC 164
           T SI    + H  L+ILS    K++ NLL FC
Sbjct: 70  TSSIRTERQFHNELIILSKLKHKNLINLLGFC 101


>At4g11890.1 68417.m01890 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 351

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 69  TVSIHFHHRLHTNLLILSSFSSKSVENLLSFC 164
           T SI    + H  L+ILS    K++ NLL FC
Sbjct: 69  TSSIRTERQFHNELIILSKLKHKNLINLLGFC 100


>At3g09070.1 68416.m01066 glycine-rich protein similar to
           hypothetical protein GB:AAD32765 [Arabidopsis thaliana]
          Length = 685

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 277 AGLEDELETSAPPPAISTSTNGFDDFVEVPSAS 375
           A ++  +E  APPP +   TNG  D V +P  S
Sbjct: 413 ADMQFPVEEPAPPPPVVNQTNGVSDPVIIPGGS 445


>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1131

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 268 NQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTV 435
           NQLA        S+P  ++S+S++   D + V  ++  + + L DD P  S P+ V
Sbjct: 588 NQLAHFFSPSPASSPVQSVSSSSSRSKDSIGVEGSNRVNRSLLKDDTPPSSGPSRV 643


>At3g56760.1 68416.m06313 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820
          Length = 577

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +1

Query: 262 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFK 441
           +Q++   + +E+E +    +    ++GF  +   P  S F  +  +  + + STP  +FK
Sbjct: 11  QQSKNLPISNEIEETPKNSSQKAKSSGFPFYSPSPLPSLFKTSPAVSSSSVSSTPLRIFK 70

Query: 442 QEREEPEKIK 471
           +    P   K
Sbjct: 71  RPFPPPSPAK 80


>At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 346 DDFVEVPSASAFDANGLLD-DAPLGSTPTTVFKQEREEPEKIKIWRE 483
           D+ V +P     DA      + P G     + +  R EPE+IK W+E
Sbjct: 98  DELVVIPIFYRLDATNCKRLEGPFGDNFRNLERDYRSEPERIKKWKE 144


>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 764

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 223 EPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTS 333
           +PEV+PAA+ +  +Q   +  E+ +E +A  P  + S
Sbjct: 383 QPEVNPAAELVVSDQRVASPREERMEPAAATPEAAAS 419


>At1g59312.1 68414.m06676 hypothetical protein
          Length = 486

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 249 ICCWIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHSLTKMMRELT 109
           IC  ++  F E+V KI+  Q   W    N + VD   S   +M +LT
Sbjct: 140 ICLPVEKEFLESVKKIVTSQRHSWR--ANTLSVDTNRSFALLMDDLT 184


>At1g58936.1 68414.m06664 hypothetical protein
          Length = 486

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 249 ICCWIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHSLTKMMRELT 109
           IC  ++  F E+V KI+  Q   W    N + VD   S   +M +LT
Sbjct: 140 ICLPVEKEFLESVKKIVTSQRHSWR--ANTLSVDTNRSFALLMDDLT 184


>At1g58643.1 68414.m06656 hypothetical protein
          Length = 486

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 249 ICCWIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHSLTKMMRELT 109
           IC  ++  F E+V KI+  Q   W    N + VD   S   +M +LT
Sbjct: 140 ICLPVEKEFLESVKKIVTSQRHSWR--ANTLSVDTNRSFALLMDDLT 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,708,947
Number of Sequences: 28952
Number of extensions: 326798
Number of successful extensions: 1062
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)