Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0067
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27430.1 68418.m03274 signal peptidase subunit family protein...    28   4.1  
At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family...    28   4.1  
At5g01250.1 68418.m00033 alpha 1,4-glycosyltransferase family pr...    27   7.1  
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing...    27   7.1  

>At5g27430.1 68418.m03274 signal peptidase subunit family protein
           contains Pfam profile:  PF04573 signal peptidase subunit
          Length = 167

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 584 IWQVLISEWSHPLFWLQLKSLFHFF*Q 504
           +W  +I E  H  FW+Q+ + + F  Q
Sbjct: 100 LWDAIIPEKEHAKFWIQISNKYRFIDQ 126


>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
           protein related to LENOD2 [Lupinus luteus]
           gi|296830|emb|CAA39050;  and genefinder
          Length = 302

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 152 AEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 247
           A+ S  Q  +  P+PH +P +PG P    T +
Sbjct: 66  AKISVNQYPSVFPIPHPVPPSPGHPPHQNTKI 97


>At5g01250.1 68418.m00033 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162]; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 407

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 3   FGTRERSALSTANKSHLFNCLFLLKISFIS 92
           FG RE  A+ +  KSH + CL +L  +  S
Sbjct: 138 FGNREVLAIESVFKSHPYGCLMILSATMDS 167


>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein similar to
           Ran binding protein [Homo sapiens] GI:624232; contains
           Pfam profile PF00638: RanBP1 domain
          Length = 465

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 390 ACSSGFTEAGTDDADTGVASVTFSASGFTF 301
           A SS    + + +A TG+AS  FSAS F+F
Sbjct: 237 ALSSFHQHSSSKNAFTGLASTGFSASSFSF 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,889,930
Number of Sequences: 28952
Number of extensions: 160262
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)