Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0066
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20360.1 68416.m02579 meprin and TRAF homology domain-contain...    28   4.0  
At5g04540.1 68418.m00454 expressed protein                             28   5.3  
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ...    28   5.3  
At5g46910.1 68418.m05783 transcription factor jumonji (jmj) fami...    27   7.0  
At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    27   7.0  
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr...    27   9.2  
At2g30690.1 68415.m03742 expressed protein contains Pfam profile...    27   9.2  
At1g58180.2 68414.m06602 carbonic anhydrase family protein / car...    27   9.2  
At1g58180.1 68414.m06601 carbonic anhydrase family protein / car...    27   9.2  

>At3g20360.1 68416.m02579 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 363

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 533 NLVLSLTNTSDANYYKCEFQSRSFHQGSYNWSFCFY 426
           +L +   NT   + Y   ++SR F  G YNW+   Y
Sbjct: 70  SLKMESFNTLMKSVYTERYESRPFRVGRYNWTLVVY 105


>At5g04540.1 68418.m00454 expressed protein
          Length = 833

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = -1

Query: 282 FISCIPNAFMSSFLSNLALELRTLRTSEKCLCYISAYRLSIELSKGIAVXXXXXXXXXSK 103
           FI C+ +    +FL N   E +    SE C C I AY   +  S G +          S+
Sbjct: 568 FIDCLLSCRFGNFLCNSEKERQQCGISETCGC-IWAYLADLRSSSGTSHVHCNPFYDPSR 626

Query: 102 FNLPFITFVSLTFKSRNPQFIL 37
           ++ P +   +    +  PQF L
Sbjct: 627 YDGPLLPPAAALAPTLWPQFHL 648


>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 308

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 323 KQNLVNHVLACETIISEMSNRFENLKLTETEM--LNNRNKKTNYNFLDENFGTEIHIYNS 496
           +Q++VN    C T + E S   E L+L  TE+  +N R K    + +  +        + 
Sbjct: 44  RQDMVNREALCYTRLHEASLEAEALRLENTELRSMNLRLKNELNSLIRSSIQNRFDHRSP 103

Query: 497 LRLMCLLSL 523
           LR++  LS+
Sbjct: 104 LRMLSNLSI 112


>At5g46910.1 68418.m05783 transcription factor jumonji (jmj) family
           protein contains Pfam domains PF02375: jmjN domain and
           PF02373: jmjC domain
          Length = 707

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 332 LVNHVLAC-ETIISEMSNRFENLKLTETEMLNNRNKKTNY 448
           L +  L C E ++   S++ ENL LT TE+   R+ KT +
Sbjct: 347 LPHEELICKEAMLLNSSSKSENLDLTPTELSGQRSIKTAF 386


>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +2

Query: 272 QEMKHFVATKLQQVTLFKQNLVNHVLACETIISEMS---NRFEN-LKLTETE 415
           Q  KHF ++K +   + + NLVN+V   E  ++ M    NR +N LK TE E
Sbjct: 533 QTKKHFESSK-KDWEMKEANLVNYVKKMEEDVASMGKEMNRLDNLLKRTEEE 583


>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
           protein similar to the myc family of helix-loop-helix
           transcription factors; contains Pfam profile PF00010:
           Helix-loop-helix DNA-binding domain; PMID: 12679534
          Length = 423

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/37 (24%), Positives = 24/37 (64%)
 Frame = +2

Query: 335 VNHVLACETIISEMSNRFENLKLTETEMLNNRNKKTN 445
           V+++ + ++ I ++    + +K+TET+ L+N +  T+
Sbjct: 288 VSYIESLKSKIDDLETEIKKMKMTETDKLDNSSSNTS 324


>At2g30690.1 68415.m03742 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593; expression
           supported by MPSS
          Length = 788

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 393 FSNLLLISDIIVSQANTWFTRFCLKRVTCW 304
           F  LL+  D ++S    WF R+C  ++ C+
Sbjct: 27  FLILLMFIDALLSYLLVWFARYCRLQMPCF 56


>At1g58180.2 68414.m06602 carbonic anhydrase family protein /
           carbonate dehydratase family protein similar to
           SP|P46512 Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate
           dehydratase 1) {Flaveria linearis}; contains Pfam
           profile PF00484: Carbonic anhydrase
          Length = 290

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 362 IISEMSNRFENLKLTETEMLNNRNKKTNYNFLDE 463
           ++   +N  + L + E  M  NR  +T+Y+FLDE
Sbjct: 45  LLPRRTNMVQELGIREEFMDLNRETETSYDFLDE 78


>At1g58180.1 68414.m06601 carbonic anhydrase family protein /
           carbonate dehydratase family protein similar to
           SP|P46512 Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate
           dehydratase 1) {Flaveria linearis}; contains Pfam
           profile PF00484: Carbonic anhydrase
          Length = 256

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 362 IISEMSNRFENLKLTETEMLNNRNKKTNYNFLDE 463
           ++   +N  + L + E  M  NR  +T+Y+FLDE
Sbjct: 45  LLPRRTNMVQELGIREEFMDLNRETETSYDFLDE 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,396,529
Number of Sequences: 28952
Number of extensions: 179495
Number of successful extensions: 623
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)