Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0062
(509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 32 0.20
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 27 0.28
At5g45520.1 68418.m05591 hypothetical protein 31 0.34
At5g05480.1 68418.m00590 expressed protein 31 0.45
At3g10720.2 68416.m01291 pectinesterase, putative contains simil... 30 0.79
At1g23540.1 68414.m02960 protein kinase family protein contains ... 30 1.0
At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1) ... 25 1.7
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 1.8
At1g80450.1 68414.m09421 VQ motif-containing protein contains PF... 29 1.8
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 28 3.2
At3g63470.1 68416.m07147 serine carboxypeptidase, putative simil... 28 3.2
At3g58980.1 68416.m06574 F-box family protein contains two F-box... 28 4.2
At2g46900.1 68415.m05857 expressed protein contains Pfam profile... 28 4.2
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00... 28 4.2
At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar t... 27 5.5
At5g49920.1 68418.m06181 octicosapeptide/Phox/Bem1p (PB1) domain... 27 5.5
At1g31000.1 68414.m03796 F-box family protein contains F-box dom... 27 5.5
At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp... 27 7.3
At3g11590.1 68416.m01416 expressed protein 27 7.3
At5g03080.1 68418.m00256 phosphatidic acid phosphatase-related /... 27 9.7
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 27 9.7
At1g54200.1 68414.m06178 expressed protein 27 9.7
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 32.3 bits (70), Expect = 0.20
Identities = 27/127 (21%), Positives = 52/127 (40%)
Frame = +2
Query: 68 KQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKSIPPWVXXXXXXXXXXXXVWCQRPLD 247
++ S+P+PE S +PQ+ + E + P +PK P +P
Sbjct: 430 EEPSKPKPEESPKPQQPSP--KPETPSHEPSNPKEPKPESPKQESPKTEQPK---PKPES 484
Query: 248 GKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKS 427
K+ P++ P +PE ++ + Q+ + +SP + +P S +P ++
Sbjct: 485 PKQESPKQEAPKPEQPKPKPESPKQESSKQEPPKPEESPK--PEPPKPEESPKPQPPKQE 542
Query: 428 LPKDSAS 448
PK S
Sbjct: 543 TPKPEES 549
>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
similar to delta-8 sphingolipid desaturase GI:3819708
from [Brassica napus]
Length = 449
Score = 27.5 bits (58), Expect(2) = 0.28
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 262 WTLFTIQWSLAPYWRRSFCFLFLS 191
WT F + S P W+ F F+F+S
Sbjct: 294 WTWFPLLVSFLPNWQERFIFVFVS 317
Score = 23.0 bits (47), Expect(2) = 0.28
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 178 WYRLRTVGTVIYGLLINVNSFFLGLRAKFGLRLGILFSRCH 56
W+ +T GT+ ++ FF GL+ + L RCH
Sbjct: 347 WFEKQTAGTLDISCRSFMDWFFGGLQFQLEHHLFPRLPRCH 387
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +2
Query: 245 DGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWST 403
DGK+SPP+E + ++ + V + + KG + + K+ + +W +
Sbjct: 754 DGKESPPQESIDTIQNMTDDQTKVEKEGDRDKGKVDPEEGKKHDEVEGGIWKS 806
>At5g05480.1 68418.m00590 expressed protein
Length = 608
Score = 31.1 bits (67), Expect = 0.45
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -2
Query: 466 STSLNVRSTIFGQTFAIFRRPC*PHRLT--CL-LVFRRTVDLTCALLHFITPPNPLRFCI 296
S S +RS + Q + RRP +LT C ++FR + T F TP P CI
Sbjct: 35 SASTCLRSPVEPQEYEELRRPLPSDQLTPSCSHVLFRHSFANTINRPPFTTPYTPPSSCI 94
Query: 295 SIPW 284
S PW
Sbjct: 95 SPPW 98
>At3g10720.2 68416.m01291 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 619
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 59 TPRKQNSQPQPEFSAQPQKEAVYV--NQEPIYYCPDSPKSIPP 181
+P + +S+P + +P E+ + +Q PI+ P P S+PP
Sbjct: 31 SPSQPHSEPPSQLPFEPPVESPFFPPSQPPIFVPPSQPPSLPP 73
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 29.9 bits (64), Expect = 1.0
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +2
Query: 239 PLDGKKSPP----RELVTPPRDANTEPEWVRRSNEMQ-KGAREVDSPPKYQQTSQPVWST 403
P+D SPP E +PP D+ T P SN+ ++++ SPP S V T
Sbjct: 87 PVDSTPSPPPPTSNESPSPPEDSETPPAPPNESNDNNPPPSQDLQSPPP-SSPSPNVGPT 145
Query: 404 RP-SENRKSLPKDSASNVQGS 463
P S +S P AS+ S
Sbjct: 146 NPESPPLQSPPAPPASDPTNS 166
>At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1)
identical to delta-8 sphingolipid desaturase GI:3819710
from [Arabidopsis thaliana]; contains Pfam profile
PF00487: Fatty acid desaturase; contains Pfam profile
PF00173: Heme/Steroid binding domain
Length = 449
Score = 24.6 bits (51), Expect(2) = 1.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 262 WTLFTIQWSLAPYWRRSFCFLFLS 191
WT F + S P W F F+F S
Sbjct: 294 WTWFPLLVSCLPNWPERFFFVFTS 317
Score = 23.0 bits (47), Expect(2) = 1.7
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -2
Query: 178 WYRLRTVGTVIYGLLINVNSFFLGLRAKFGLRLGILFSRCHGNKM 44
W+ + GT+ ++ FF GL+ + L RCH K+
Sbjct: 347 WFEKQAAGTIDISCRSYMDWFFGGLQFQLEHHLFPRLPRCHLRKV 391
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.1 bits (62), Expect = 1.8
Identities = 28/119 (23%), Positives = 41/119 (34%)
Frame = +2
Query: 62 PRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKSIPPWVXXXXXXXXXXXXVWCQRP 241
P NS P P +S P V+ P++ P P PP V+ P
Sbjct: 520 PAPVNSPPPPVYSPPPPPPPVHSPPPPVHSPPPPPVYSPP--PPPPPVHSPPPPVFSPPP 577
Query: 242 LDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSEN 418
SPP + +PP ++ P + PP PV+S PS++
Sbjct: 578 --PVYSPPPPVHSPPPPVHSPPP-PAPVHSPPPPVHSPPPPPPVYSPPPPVFSPPPSQS 633
>At1g80450.1 68414.m09421 VQ motif-containing protein contains
PF05678: VQ motif
Length = 177
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 35 PIKHLIPVTPRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKS 172
P+ HL P R + E AQP KE E +Y SP+S
Sbjct: 100 PVSHLDPFWARVSPHSAREEHHAQPDKEEQKAIAEKGFYFLPSPRS 145
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Frame = +2
Query: 53 PVTPRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDS--PKSIPPWVXXXXXXXXXXXXV 226
P P QP P + QP + P+ P + PK +PP + +
Sbjct: 51 PQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAI 110
Query: 227 WCQRP--LDGKKSPPRELVTPPRDANTEP 307
P + SPP +TPP T P
Sbjct: 111 TPPPPPAITPPLSPPPPAITPPPPLATTP 139
>At3g63470.1 68416.m07147 serine carboxypeptidase, putative similar
to SP|P52711 Serine carboxypeptidase II-3 precursor (EC
3.4.16.6) Hordeum vulgare; contains Pfam profile PF0450
serine carboxypeptidase
Length = 502
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 246 MVKRVHRESLLHHQGMLIQNLSGLGGVMKCKRAHVRSTVRLNTNRQVSRCGQHGLRK 416
+V R+ S +H L + G+GG +H ++ L + S Q GLRK
Sbjct: 22 VVSRIECSSQVHALSRLYLSKRGVGGSSTMDTSHFKAVKDLKPSSLRSAANQEGLRK 78
>At3g58980.1 68416.m06574 F-box family protein contains two F-box
domains Pfam:PF00646
Length = 594
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 357 TVRLNTNRQVSRCGQHGLRKIAKVCPKIVLLTFREVELFPYKW 485
T+ L++ + RCG +K+ CP +V R +E ++W
Sbjct: 455 TLILDSVKFYDRCGCCAFQKLLSACPVLVESVMRNLEWEDWEW 497
>At2g46900.1 68415.m05857 expressed protein contains Pfam profile
PF04910: Protein of unknown function, DUF654
Length = 627
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = +2
Query: 245 DGKKSPPRELVTP---PRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSE 415
D ++S R + P D + +PE + +K + D QPV + +
Sbjct: 29 DEEESGARSSINPFDLLNDGDEDPEEIDDETIAEKKNEDADHQSSVADHVQPVSKNKSKK 88
Query: 416 NRKSLPKDSASNV 454
+K K+S SNV
Sbjct: 89 KKKKKNKESGSNV 101
>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
F-box domain
Length = 435
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 382 CLLVFRRTVDLTCALLH-FITPPNPLRFCISIPWWCNKLSRWTLFTIQWS 236
CLLV R + L +++H + N R SIP WC+ + LF WS
Sbjct: 291 CLLV--RMMSLVGSVIHRYDLRANKWRVLGSIPTWCDADRDFFLFKPSWS 338
>At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar to
maize glossy1 homolog GI:2213643 from [Oryza sativa];
contains Pfam profile PF01598: Sterol desaturase
Length = 632
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 373 VFRRTVDLTCALLHFITPPNPLRFCISIPWWC-NKLSRWTLFTIQWSLAPYW 221
VFR + F+ P P FC+ + W +K ++ +T++ +L W
Sbjct: 317 VFRSFASMPYTTRIFLLPMWPFTFCVMLGMWAWSKTFLFSFYTLRNNLCQTW 368
>At5g49920.1 68418.m06181 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 288
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 24 QARYQSSILFP*HRENKIPNLSPNLARSPKKKLFTLIRSPYITVPT 161
Q YQ S L+P HR + PN+S L P + Y+ PT
Sbjct: 181 QNNYQLSRLYPMHRVHSSPNISHQL--QPHSHYHNHNHNAYVQPPT 224
>At1g31000.1 68414.m03796 F-box family protein contains F-box domain
Pfam:PF00646
Length = 363
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -2
Query: 271 LSRWTLFTIQWS---LAPYWRRSFCFLFLSLYP 182
+SR+ L + WS +PY+ RSF FLF S+ P
Sbjct: 35 VSRFLLVSKLWSEIIRSPYFIRSFPFLFSSIQP 67
>At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam profile: PF01805
surp module
Length = 679
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 257 SPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPK 370
SPP +++PPR N SN+ ++ PP+
Sbjct: 363 SPPVRMMSPPRPQNDLQSGQSNSNKAPASVAPIEPPPE 400
>At3g11590.1 68416.m01416 expressed protein
Length = 622
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +2
Query: 248 GKKSPPRELVTPPRDANTEPEWVRRSNEMQKG-------AREVDSPPK-YQQTSQPVWST 403
G+KS PR+ ++ R + +WV +S ++QK R +D PK Y +Q
Sbjct: 519 GRKSTPRKSLSLQRSISDCVDWVVQSEKLQKSGDGGLDWGRSIDVEPKGYIDETQAYKPN 578
Query: 404 R-PSENRKSLPKDSASNVQGSRI 469
+ S++ L SN +G +
Sbjct: 579 KASSKDHHILSGSRLSNFRGGSV 601
>At5g03080.1 68418.m00256 phosphatidic acid phosphatase-related /
PAP2-related contains Pfam profile PF01569: PAP2
superfamily
Length = 226
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 301 CISIPWWCNKLSRWTLFTIQWSLA 230
C I +W SRW + + WSLA
Sbjct: 115 CKGIGFWFGLRSRWIMNLLHWSLA 138
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 62 PRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKSIPP 181
P +S P P+FS P + Y + P + P P S PP
Sbjct: 539 PPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSP-PPHSPPP 577
>At1g54200.1 68414.m06178 expressed protein
Length = 366
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 297 IQNLSGLGGVMKCKRAHVRSTVRLNTNRQVSR 392
+ NLS +G + V T RLNTNR +SR
Sbjct: 335 LDNLSAIGIDRYREELPVYETTRLNTNRIISR 366
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,574,286
Number of Sequences: 28952
Number of extensions: 246794
Number of successful extensions: 878
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -