Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0054
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 128 2e-30
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 123 9e-29
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 122 2e-28
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 122 2e-28
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 122 2e-28
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 122 2e-28
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 120 9e-28
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 118 5e-27
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 117 6e-27
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 117 6e-27
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 117 6e-27
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 117 6e-27
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 116 2e-26
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 115 3e-26
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 68 6e-22
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 99 3e-21
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 81 8e-16
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 52 2e-15
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 76 2e-14
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 76 2e-14
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 75 6e-14
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 75 6e-14
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 75 6e-14
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 70 2e-12
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 70 2e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 4e-12
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 66 1e-11
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 66 2e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 65 3e-11
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 64 8e-11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 63 2e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 63 2e-10
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 62 2e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 3e-10
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 62 3e-10
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 62 4e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 62 4e-10
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 61 6e-10
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 61 6e-10
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 61 6e-10
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 61 7e-10
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 61 7e-10
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 61 7e-10
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 61 7e-10
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 61 7e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 61 7e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 61 7e-10
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 60 1e-09
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 60 1e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 60 1e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 60 1e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 59 2e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 59 3e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 5e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 5e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 5e-09
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 57 9e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 57 9e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 9e-09
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 57 9e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 57 1e-08
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 57 1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 56 2e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 56 2e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 56 2e-08
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 56 2e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 56 2e-08
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 3e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 55 4e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 4e-08
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 55 4e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 5e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 5e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 55 5e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 54 8e-08
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 54 8e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 8e-08
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 54 8e-08
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 53 1e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 3e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 52 3e-07
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 52 3e-07
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 52 3e-07
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 51 6e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 51 6e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 51 6e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 51 6e-07
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 50 1e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 1e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 50 1e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 50 1e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 2e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 50 2e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 50 2e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 4e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 48 4e-06
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 48 4e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 48 4e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 48 5e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 5e-06
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 48 5e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 48 7e-06
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 48 7e-06
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 48 7e-06
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 48 7e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 47 1e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 1e-05
At2g47310.1 68415.m05906 flowering time control protein-related ... 47 1e-05
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 47 1e-05
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 47 1e-05
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 47 1e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 2e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 46 3e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 45 5e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 45 5e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 7e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 7e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 7e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 7e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 9e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 1e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 44 1e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 43 2e-04
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 3e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 42 4e-04
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 42 4e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 42 5e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 8e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 40 0.001
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 40 0.001
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 0.001
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 40 0.002
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.003
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.004
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.004
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.004
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.004
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.006
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.006
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.008
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.008
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.008
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 38 0.008
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.010
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 37 0.014
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.018
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.018
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.018
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.018
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.024
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.024
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.024
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 36 0.031
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.041
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.055
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.055
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.072
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.072
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 34 0.096
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.096
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 33 0.13
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.17
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.17
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.17
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 33 0.17
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 33 0.22
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.22
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.22
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 33 0.22
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 32 0.29
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.29
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.29
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 32 0.39
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.39
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.39
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.39
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 31 0.51
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 0.51
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 0.51
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.51
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.51
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.67
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.67
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 31 0.67
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.89
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.89
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 1.2
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 1.2
At2g33440.1 68415.m04099 splicing factor family protein similar ... 30 1.2
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ... 30 1.2
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ... 30 1.2
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 1.6
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 30 1.6
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.6
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 30 1.6
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 2.1
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.1
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 2.1
At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing ... 29 2.1
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 2.7
At2g47390.1 68415.m05915 expressed protein 29 2.7
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 2.7
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.6
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.6
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 4.8
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.8
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac... 28 4.8
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac... 28 4.8
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 6.3
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 6.3
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 8.3
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 27 8.3
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 8.3
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 8.3
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 27 8.3
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 8.3
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 8.3
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 128 bits (310), Expect = 2e-30
Identities = 68/183 (37%), Positives = 105/183 (57%), Gaps = 25/183 (13%)
Frame = +1
Query: 184 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 363
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 364 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 468
+ +H+I+ ++VD K+A +R KIFVGGL ++
Sbjct: 64 LQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 469 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 648
D+E R +F +G + +V + +D+ N+ +GF F++F+SE V+ +L + GK+V+V
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEV 182
Query: 649 KRA 657
KRA
Sbjct: 183 KRA 185
Score = 68.5 bits (160), Expect = 4e-12
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Frame = +1
Query: 88 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 258
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 259 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 438
YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Query: 439 FVGGLS 456
GG S
Sbjct: 193 GGGGRS 198
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 123 bits (297), Expect = 9e-29
Identities = 74/205 (36%), Positives = 115/205 (56%), Gaps = 18/205 (8%)
Frame = +1
Query: 97 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 261
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 262 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK---------- 411
GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKDT 148
Query: 412 --KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 585
KA ++ KIFVGGL + +DE++N+F +G I+E ++ +D + +GF F+TF++E
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Query: 586 QVVNDLLKTPK-RTIGGKEVDVKRA 657
V+ L K +G K+V++KRA
Sbjct: 209 DSVDRLFSDGKVHELGDKQVEIKRA 233
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
RK+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 370 AGE-HTINNKKVDPKKAKAR 426
G+ H + +K+V+ K+A+ +
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 122 bits (295), Expect = 2e-28
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 10/200 (5%)
Frame = +1
Query: 88 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGE 267
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Query: 268 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG----- 432
I + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 68 ITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRGSMSSND 126
Query: 433 ----KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 600
KIFVGG+ S + DDE + FF +FG + E ++ D + + +GF F+T+ESE +V+
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDH 186
Query: 601 LLKTPKR-TIGGKEVDVKRA 657
LL R + G +V++K+A
Sbjct: 187 LLAKGNRIELSGTQVEIKKA 206
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 122 bits (294), Expect = 2e-28
Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 25/180 (13%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM- 65
Query: 373 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 477
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 478 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 370 AGEHTINNKKVDPKKA 417
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/76 (31%), Positives = 48/76 (63%)
Frame = +1
Query: 430 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 610 TPKRTIGGKEVDVKRA 657
K I G+ V+ K+A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 122 bits (294), Expect = 2e-28
Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 25/180 (13%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM- 65
Query: 373 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 477
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 478 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 370 AGEHTINNKKVDPKKA 417
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/76 (31%), Positives = 48/76 (63%)
Frame = +1
Query: 430 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 610 TPKRTIGGKEVDVKRA 657
K I G+ V+ K+A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 122 bits (294), Expect = 2e-28
Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 25/180 (13%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM- 65
Query: 373 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 477
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 478 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 370 AGEHTINNKKVDPKKA 417
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/76 (31%), Positives = 48/76 (63%)
Frame = +1
Query: 430 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 610 TPKRTIGGKEVDVKRA 657
K I G+ V+ K+A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 120 bits (289), Expect = 9e-28
Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 12/186 (6%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 315
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 316 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 462
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 463 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKE 639
+++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL K + +
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQ 179
Query: 640 VDVKRA 657
V++K+A
Sbjct: 180 VEIKKA 185
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 118 bits (283), Expect = 5e-27
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 11/168 (6%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 315
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 316 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 462
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 463 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
+++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 370 AG 375
G
Sbjct: 169 KG 170
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/78 (34%), Positives = 44/78 (56%)
Frame = +1
Query: 421 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 600
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 601 LLKTPKRTIGGKEVDVKR 654
+++ I GK+V++KR
Sbjct: 76 VIE-DTHVINGKQVEIKR 92
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 117 bits (282), Expect = 6e-27
Identities = 64/176 (36%), Positives = 103/176 (58%), Gaps = 21/176 (11%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 373 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 489
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 490 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
F++FG I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +1
Query: 169 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 349 SIDKVMAAGEHTINNKKVDPKKA 417
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 117 bits (282), Expect = 6e-27
Identities = 64/176 (36%), Positives = 103/176 (58%), Gaps = 21/176 (11%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 373 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 489
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 490 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
F++FG I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +1
Query: 169 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 349 SIDKVMAAGEHTINNKKVDPKKA 417
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 117 bits (282), Expect = 6e-27
Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 23/183 (12%)
Frame = +1
Query: 178 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 358 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 468
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 469 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 648
+ + + +F +FGT +V + +D + +GF FIT++SE+ V +L + GK V+V
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 649 KRA 657
KRA
Sbjct: 181 KRA 183
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +1
Query: 121 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 300
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 301 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 417
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 117 bits (282), Expect = 6e-27
Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 23/183 (12%)
Frame = +1
Query: 178 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 358 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 468
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 469 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 648
+ + + +F +FGT +V + +D + +GF FIT++SE+ V +L + GK V+V
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 649 KRA 657
KRA
Sbjct: 181 KRA 183
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +1
Query: 121 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 300
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 301 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 417
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 116 bits (278), Expect = 2e-26
Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 27/182 (14%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 373 GE----HTINNKKVDPKKAK-----------------------ARHGKIFVGGLSSEISD 471
T+ KK P+ + AR KIFVGGL S I++
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135
Query: 472 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 651
E +N+F +FGTI +V + +D + +GF FITF+SE+ V+ +L + GK V+VK
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Query: 652 RA 657
RA
Sbjct: 196 RA 197
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 370 AGEHTINNKKVDPKKA 417
H +N K V+ K+A
Sbjct: 182 KTFHELNGKMVEVKRA 197
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/76 (30%), Positives = 45/76 (59%)
Frame = +1
Query: 430 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
GK+F+GG+S + ++ ++ +F ++G ++E + D+T + +GF FI F V ++
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI- 73
Query: 610 TPKRTIGGKEVDVKRA 657
K I G+ V+ K+A
Sbjct: 74 MDKHIIDGRTVEAKKA 89
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 115 bits (276), Expect = 3e-26
Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Frame = +1
Query: 184 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 363
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 364 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 468
+ +H I+N+ VD K+A +R KIFVGGL ++
Sbjct: 64 L-QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 469 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 648
DE R +F +G + + + D+T + +GF F++F+SE V+ +L + GK+V+V
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEV 182
Query: 649 KRA 657
KRA
Sbjct: 183 KRA 185
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 370 AGEHTINNKKVDPKKAKARHG 432
+ H +++K+V+ K+A + G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 65.3 bits (152), Expect(2) = 6e-22
Identities = 30/79 (37%), Positives = 50/79 (63%)
Frame = +1
Query: 421 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 600
+R KIFVGGLSS +++E +++F FG +V + D N+ +GF F+T++SE V
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEV 176
Query: 601 LLKTPKRTIGGKEVDVKRA 657
++++ + K V+VKRA
Sbjct: 177 VMQSNFHELSDKRVEVKRA 195
Score = 56.4 bits (130), Expect(2) = 6e-22
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 181 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 358 KVMAAGEHTINNKKVDPKKAKARH 429
K + H I K VD +KA +H
Sbjct: 62 KAL-RDTHFILGKPVDVRKAIRKH 84
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLK 609
K+FVGG++ E S++ ++ +FS +G +LE + +K + +GF F+ F ++ VV L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 610 TPKRTIGGKEVDVKRA 657
T I GK VDV++A
Sbjct: 67 T--HFILGKPVDVRKA 80
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 98.7 bits (235), Expect = 3e-21
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 9/166 (5%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
+RKL V G+ W+ L+D+ +G++E V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 367 AAGEHTINNKKVDPKKAKARH---------GKIFVGGLSSEISDDEIRNFFSEFGTILEV 519
GEH + N+ ++ K A + +IFV + S +S+ + R+ F +G I ++
Sbjct: 62 -KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 520 EMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
MP D Q +G FITF S V DL++ +GG V V RA
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRA 165
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
KIFVG L E S D++R++F FG I + +P D ++ +GF F+TF +E V D +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 613 PKRTIGGKEVDVKRA 657
I G+EV + A
Sbjct: 300 RSHEICGQEVAIDSA 314
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +1
Query: 154 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 333
+ E R K+FVG L E + +LRD+FG +G I+ + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 334 FKAPESIDKVMAAGEHTINNKKV 402
F D+V A H I ++V
Sbjct: 288 FAENGVADRV-ARRSHEICGQEV 309
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 80.6 bits (190), Expect = 8e-16
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
RK+FV GL W+T L D F YGEIE D +G+S+G+ FI+FK+ +
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 370 AGEHTINNKKV------------DPKKAKARH-------GKIFVGGLSSEISDDEIRNFF 492
+ I + +P A A+H KI+V +S++I ++ FF
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 493 SEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
S FG I E + DK + KGF + S + L+ P +T G + +A
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 52.0 bits (119), Expect(2) = 2e-15
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+++VG LS + D + + FSE G ++E + +D+ + KGF F+T++S Q V + +K+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 613 -PKRTIGGKEVDVKRA 657
+ G+++ V A
Sbjct: 265 LDGADLDGRQIRVSEA 280
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 103 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 282
D G + G + G +++VG LSW D L F G++
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 283 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 426
V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 48.0 bits (109), Expect(2) = 2e-15
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
D KLFVG L + +L F + G +E + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 367 AAGEHTINNKKVDPKKAKARHG 432
AA + N ++D + + G
Sbjct: 147 AAAQQ-FNGYELDGRPLRVNAG 167
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
K+FVG L + ++ F G + VE+ +DK + +GF F+T S
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 76.2 bits (179), Expect = 2e-14
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 339
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 340 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 513
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 514 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
E + FDK + +GF +++ + L P + I GK ++ K A
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 76.2 bits (179), Expect = 2e-14
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 339
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 340 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 513
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 514 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
E + FDK + +GF +++ + L P + I GK ++ K A
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 74.5 bits (175), Expect = 6e-14
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 370 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 474
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 475 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKR 654
++ FFS+FG I E + DK + KGFC ++S + L+ P +T G + ++
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQK 319
Query: 655 A 657
A
Sbjct: 320 A 320
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 427 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 607 KTPKRTIGGK 636
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 74.5 bits (175), Expect = 6e-14
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 370 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 474
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 475 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKR 654
++ FFS+FG I E + DK + KGFC ++S + L+ P +T G + ++
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQK 319
Query: 655 A 657
A
Sbjct: 320 A 320
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 427 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 607 KTPKRTIGGK 636
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 74.5 bits (175), Expect = 6e-14
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 370 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 474
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 475 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKR 654
++ FFS+FG I E + DK + KGFC ++S + L+ P +T G + ++
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQK 319
Query: 655 A 657
A
Sbjct: 320 A 320
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 427 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 607 KTPKRTIGGK 636
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +1
Query: 169 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 349 SIDKVMAAGEHTINNKKVDPKKA 417
++DKV+ H +N K V+ K A
Sbjct: 86 AVDKVLQKTFHELNGKMVEVKLA 108
Score = 68.1 bits (159), Expect = 5e-12
Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Frame = +1
Query: 358 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 528
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I +V +
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 65
Query: 529 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
+D + +GF FI+++SE+ V+ +L+ + GK V+VK A
Sbjct: 66 YDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 373 GEHTINNKKVD 405
I+ ++ +
Sbjct: 85 PTPIIDGRRAN 95
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 613 PKRTIGGKEVDVKRA 657
P I G+ + A
Sbjct: 85 PTPIIDGRRANCNLA 99
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 351
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 613 PKRTIGGKEVDVKRA 657
P I G+ + A
Sbjct: 85 PTPIIDGRRANCNLA 99
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 66.5 bits (155), Expect = 1e-11
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Frame = +1
Query: 85 AQDITTDNQLNGNAENG----GGDSQDHNS-------AEAPGRDDDRKLFVGGLSWETTD 231
+QD++ ++ G+A G G +S+ S AE P ++ KLFVG L+++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNS 163
Query: 232 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDP 408
+ L F G +E V + T +SRGF F+ + + + + + +N + +
Sbjct: 164 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
Query: 409 KKAKARHGK-------------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 549
KA R + ++VG L ++ + + FSE G ++E + +D+ +
Sbjct: 224 NKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283
Query: 550 RKGFCFITFESEQVVNDLL 606
+GF F+T +N+ +
Sbjct: 284 SRGFGFVTMSDVDELNEAI 302
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 373 GEHTINNKKVD 405
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 57.6 bits (133), Expect = 7e-09
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 613 PKRTIGGKEVD 645
P I G++ +
Sbjct: 78 PNPVIDGRKAN 88
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 373 GEHTINNKKVD 405
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 57.6 bits (133), Expect = 7e-09
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 613 PKRTIGGKEVD 645
P I G++ +
Sbjct: 78 PNPVIDGRKAN 88
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 361 VMAA-GEHTINNKKVDPKKAKARHG 432
+AA ++ + + KA+ G
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQG 88
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ F+GGL+ SD +R+ F ++G ++E ++ DK + +GF FITF+ ++ +++ +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 613 PK-RTIGGKEVDVKRA 657
+ G+ + V +A
Sbjct: 68 MNGMDLDGRTITVDKA 83
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +1
Query: 166 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 342
E+ RD R +FV G W+TT + L+ F +YGEIE +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 343 PESIDKVMAAGEHTINNKKVDPKKAKARHGK 435
+ + + E + N+ V A + GK
Sbjct: 459 RKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
IFV G + + + ++ F +G I E + DK + KG+ F+ F++ + + LK P
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 616 KR 621
++
Sbjct: 470 EK 471
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 62.9 bits (146), Expect = 2e-10
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 15/193 (7%)
Frame = +1
Query: 64 MANNDNFAQDIT-TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 240
++ N+A++ D + G + + + P ++ KLFVG L ++ + L
Sbjct: 70 VSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 129
Query: 241 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKA 417
F G +E V + +T +SRGF F+ E +K V +N +++ +A
Sbjct: 130 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Query: 418 KARHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 558
R +I+VG L ++ + FSE G +++ + D+ + +G
Sbjct: 190 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 249
Query: 559 FCFITFESEQVVN 597
F F+ +E VN
Sbjct: 250 FGFVQMSNENEVN 262
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 106 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 279
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 280 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 609
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 610 TPKRTIGGKEVDVKRA 657
+ + G+++ V A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 106 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 279
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 280 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 609
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 610 TPKRTIGGKEVDVKRA 657
+ + G+++ V A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 373 GEHTINNKKVD 405
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = +1
Query: 427 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
H K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Query: 607 KTPKRTIGGKEVD 645
P I G++ +
Sbjct: 76 ADPNPVIDGRKAN 88
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 62.5 bits (145), Expect = 2e-10
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L+ G L + T+ L D F + S+ V D N RS G+A+I F P + M A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 376 EHT--------INNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 531
+T I DP + G IF+ L + I + + FS FGTIL ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 532 DKTKNQRKGFCFITFESEQ 588
D T + KG+ F+ FE E+
Sbjct: 170 DVT-GRSKGYGFVQFEKEE 187
Score = 56.4 bits (130), Expect = 2e-08
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 15/169 (8%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV 363
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES IDK+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 364 --MAAGE------HTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 513
M + H I ++ D R ++V L EI +DE+R F +FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVIS 256
Query: 514 EVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPKRTIGGKEVDVKRA 657
+ D++ N R F F+ FE +E + + K ++G + V RA
Sbjct: 257 SAVVMRDQSGNSR-CFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 351
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
KIFVGGL+ E D +R +F +FG I+E + DK + KG+ F+TF+ + +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 613 PKRTIGGKEVDVKRA 657
I G+ + A
Sbjct: 83 MNPVIDGRRANCNLA 97
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 62.1 bits (144), Expect = 3e-10
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Frame = +1
Query: 160 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 340 APESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLSSEISDDEIRNFFS 495
PE + M + + I ++ + DP + G +F+ L + I + + FS
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 496 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
FGTIL ++ D + KG+ F+ FE E+
Sbjct: 154 SFGTILSCKVAMD-VVGRSKGYGFVQFEKEE 183
Score = 55.2 bits (127), Expect = 4e-08
Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 25/195 (12%)
Frame = +1
Query: 148 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 327
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 328 IVFKAPE----SIDKV--MAAGEHTI----NNKKVDPKK--------------AKARHGK 435
+ F +PE +++K+ ++ GE + KK D ++ K +
Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN 329
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 612
+++ L ++D++++ FSE+G + ++ + ++ +GF F+ + + E+ + + +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 388
Query: 613 PKRTIGGKEVDVKRA 657
+ IG K + V A
Sbjct: 389 NGKMIGRKPLYVALA 403
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1
Query: 166 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 342
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
Query: 343 PESIDKVMAAGEHTINNKKV 402
+ + E + N+ V
Sbjct: 214 RKGARAALKNPEKRMYNRTV 233
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
IFV GL + + + ++ F +G I E + DK + KGF F+ F++ + LK P
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 616 KRTIGGKEV 642
++ + + V
Sbjct: 225 EKRMYNRTV 233
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 373 GEHTINNKKVDPKKAKAR 426
++ +++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/75 (28%), Positives = 44/75 (58%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
KIFVGG+S + +R FS++G +++ ++ D+ + +GF F+TF S + ++ ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 613 PKRTIGGKEVDVKRA 657
+ + G+ + V A
Sbjct: 95 DGQDLHGRRIRVNYA 109
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 61.3 bits (142), Expect = 6e-10
Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 361 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 516
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 517 VEMPFDKTKNQRKGFCFITFES-EQVVN 597
+++ + KG F+ +E+ EQ V+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 61.3 bits (142), Expect = 6e-10
Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 361 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 516
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 517 VEMPFDKTKNQRKGFCFITFES-EQVVN 597
+++ + KG F+ +E+ EQ V+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 369
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 370 AGEHTINNKKV 402
G H + KK+
Sbjct: 411 NGRH-LGGKKL 420
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 61.3 bits (142), Expect = 6e-10
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 373 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFDKTKNQ 549
K ++F+G + ++DE R + G +E +E+ D T
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTT 236
Query: 550 R-KGFCFITF 576
R +GF F+ +
Sbjct: 237 RNRGFAFVLY 246
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +1
Query: 427 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 603
HG ++F+GGL ++ ++++R+ E G I EV + D+ KG+ F+ F+++ V
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 604 LK 609
++
Sbjct: 174 IE 175
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +1
Query: 94 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 273
I ++ +L GNA + + + L+V + T+ ++L++ F +GE+
Sbjct: 260 IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT 319
Query: 274 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAK 420
I T P G R F F+ + S K + E + +N + ++ AK
Sbjct: 320 KI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 60.9 bits (141), Expect = 7e-10
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Frame = +1
Query: 160 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 333
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 334 FK-------APESIDKVMAAGEHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 483
F+ A ++++ + A + K K D K + ++ +++ L +++S+D +R
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 484 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEVDVKRA 657
F+EFG I+ + + D+ + R G+ F+ F++ + +T T G K + V RA
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCR-GYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
Score = 50.8 bits (116), Expect = 8e-07
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI------- 354
L++ L + ++ LR+ F +G+I S+ + D N RG+AF+ F PE
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 355 ------DKVMAAG--------EHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 483
K + G E + + K + +K A+ I+V ++ ++++E+R
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 484 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
FS+ GTI ++ D+ K + KGF F+ F + + D +KT
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKT 363
Score = 50.0 bits (114), Expect = 1e-06
Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 376 EHTINNKKV--------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 531
+++ N K+ P + G +FV L +++ +++ F +FG I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA- 144
Query: 532 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTI-GGKEVDV 648
+ +G+ F+ FE E + ++T TI KE+ V
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 60.9 bits (141), Expect = 7e-10
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 9/186 (4%)
Frame = +1
Query: 118 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 297
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 298 NTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAKARHGKIFVGGL 453
T S G+ ++ + + +K M ++ N K+ D ++ G +FV L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 454 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLKTPKRTIG 630
+ + + FS GTI+ ++ D Q +G+ F+ F++E N + K + +
Sbjct: 142 DKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLN 200
Query: 631 GKEVDV 648
K++ V
Sbjct: 201 DKQIFV 206
Score = 55.6 bits (128), Expect = 3e-08
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 29/183 (15%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA- 284
Query: 376 EHTINNKKVDPKK---AKARH-------------------GKIFVG------GLSSEISD 471
+N KK D K+ KA+ G F G L ++D
Sbjct: 285 ---LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTD 341
Query: 472 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDV 648
+++R F+EFGTI ++ D + KG F+ F + + +L + +GGK + V
Sbjct: 342 EKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV 400
Query: 649 KRA 657
A
Sbjct: 401 ALA 403
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +1
Query: 151 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 330
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 331 VFKAPESIDKVM 366
F A +V+
Sbjct: 374 AFSAASEASRVL 385
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 60.9 bits (141), Expect = 7e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 166 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 342
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 343 PESIDKVMAAGEHTINNK 396
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 334 FKAPESIDKVMAAGE--HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 507
+ + +D V +A +I + V+ H KIFV GL E + + + F +G
Sbjct: 70 YSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGE 129
Query: 508 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTI 627
I E + DK + KGF F+ F++ + + LK PK+ I
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 60.9 bits (141), Expect = 7e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 166 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 342
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 343 PESIDKVMAAGEHTINNK 396
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 334 FKAPESIDKVMAAGE--HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 507
+ + +D V +A +I + V+ H KIFV GL E + + + F +G
Sbjct: 70 YSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGE 129
Query: 508 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTI 627
I E + DK + KGF F+ F++ + + LK PK+ I
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 60.9 bits (141), Expect = 7e-10
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Frame = +1
Query: 106 NQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESIN 282
N+LN A NG ++ + R +F+ L K L + F A+G I S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 283 VKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-----------DPKKAKAR 426
V DP+ G+S+G+ F+ + E+ + +N+K+V DP K +
Sbjct: 164 VAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 427 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
++V LS +SD+E+ F EFG + D + + KGF F+ FE+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFEN 273
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +1
Query: 166 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 345
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 346 ESIDKVM 366
E + +
Sbjct: 378 EEATRAI 384
Score = 41.5 bits (93), Expect = 5e-04
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 372
++V LS +D+EL FG +G S + D G+S+GF F+ F+ + ++ V A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 373 GEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEISDDEIR 483
T ++K+ KA K++ ++V L ++DD++R
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 484 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
F+ FGTI ++ D + R G F+ F + +
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSR-GSGFVAFSTPE 378
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 373 GEHTINNKKVD 405
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 613 PKRTIGGKEVDVKRA 657
P I G+ + A
Sbjct: 68 PAPVIDGRRANCNLA 82
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 373 GEHTINNKKVD 405
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 613 PKRTIGGKEVDVKRA 657
P I G+ + A
Sbjct: 68 PAPVIDGRRANCNLA 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 60.5 bits (140), Expect = 1e-09
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Frame = +1
Query: 121 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 291
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 292 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 438
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 439 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 60.5 bits (140), Expect = 1e-09
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Frame = +1
Query: 121 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 291
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 292 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 438
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 439 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 357
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 358 KVMAAGEHTINNKKVDPKKAKAR 426
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 613 PK-RTIGGKEVDVKRA 657
+ + G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 357
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 358 KVMAAGEHTINNKKVDPKKAKAR 426
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 613 PK-RTIGGKEVDVKRA 657
+ + G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-K 609
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 610 TPKRTIGGKEVDVKRA 657
+ + G+ + V A
Sbjct: 96 MDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-K 609
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 610 TPKRTIGGKEVDVKRA 657
+ + G+ + V A
Sbjct: 96 MDGKELNGRHIRVNPA 111
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 585
K+F+GGLS + + +++ FS FG + EV + +DK + +GF F+ F E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 363
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 364 MAAGEHTINNKKVDPKKAKARHG 432
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 609
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 610 TPKRTIGGKEVDVKRA 657
R +G K + V +A
Sbjct: 73 MHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 363
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 364 MAAGEHTINNKKVDPKKAKARHG 432
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 609
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 610 TPKRTIGGKEVDVKRA 657
R +G K + V +A
Sbjct: 73 MHGRELGNKVISVNKA 88
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 59.3 bits (137), Expect = 2e-09
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 13/155 (8%)
Frame = +1
Query: 163 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 340 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG-------KIFVGGLSSEISDDEIR 483
E DKV+ ++ +NKK P + K G K+FVG L +S+ E++
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQ 117
Query: 484 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 118 SLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 151
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 613 --PKRTIGG 633
K+T+ G
Sbjct: 73 FHNKKTLPG 81
Score = 34.7 bits (76), Expect = 0.055
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 388
Query: 376 EHTINNKKVDPKKAKAR 426
+T+N ++ KK K +
Sbjct: 389 -NTMNGCQLSGKKLKVQ 404
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +1
Query: 157 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 337 KAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 435
K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 124 KSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 616 KRTI-GGKEVDVKRA 657
++ G+ + V++A
Sbjct: 137 DHSVLQGRVITVEKA 151
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 373 GEHTINNKKVD 405
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 613 PKRTIGGKEVDVKRA 657
I G+ + A
Sbjct: 74 ATPVIDGRRANCNLA 88
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 373 GEHTINNKKVD 405
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 613 PKRTIGGKEVDVKRA 657
I G+ + A
Sbjct: 74 ATPVIDGRRANCNLA 88
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 373 GEHTINNKKVD 405
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 613 PKRTIGGKEVDVKRA 657
I G+ + A
Sbjct: 74 ATPVIDGRRANCNLA 88
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 57.2 bits (132), Expect = 9e-09
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Frame = +1
Query: 142 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 321
D +D A+ P RD R +F + + T++++ + F G++ + + D N+ RS+G
Sbjct: 154 DKKDEPEAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 211
Query: 322 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------KIFVGG 450
+I F S+ +A + V K ++A K++VG
Sbjct: 212 GYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGN 271
Query: 451 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
L +S+ ++R F FG + V++P D Q KGF FI F
Sbjct: 272 LHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 57.2 bits (132), Expect = 9e-09
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +1
Query: 421 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 597
A+ G +IFVGGLS E++D ++ FS FG IL+ ++ ++ + +GF FITF + ++
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 598 DLLKTPK-RTIGGKEVDVKRA 657
+ ++ R G + + V RA
Sbjct: 63 ESIREMHGRDFGDRVISVNRA 83
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 373 ------GEHTINNKKVDPK 411
G+ I+ + +PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 115 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 288
+G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
Query: 289 TDPNTGRSRGFAFIVFKAPESIDKVM 366
D T RSRG A+I++ PE + M
Sbjct: 294 LDKETKRSRGIAYILYLIPECAARAM 319
Score = 42.7 bits (96), Expect = 2e-04
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Frame = +1
Query: 172 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIESINVKTDPNTGR--SRGFAFIVF 336
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 337 KAPESIDKVMAAGEHTI-----------NNKKVDPKKAKARHG----KIFVGGLSSEISD 471
+ E+ V + T+ NK+ D + K+ V ++ E +
Sbjct: 623 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 682
Query: 472 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
E+R FS FG I + +P K Q G+ F+ F ++Q
Sbjct: 683 RELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQ 720
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/131 (19%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMA 369
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 370 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFD-KTK 543
K++ +A+H ++F+G + + +I+ + G ++ VE+P + +
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH-RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNM 211
Query: 544 NQRKGFCFITF 576
+ +GF FI +
Sbjct: 212 GRNRGFAFIEY 222
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 427 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 603
HG ++++GG+ ++ ++ +++ F G + EV + +K KG+ F+TF S+ + +
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 604 LKTPKRT-IGGKEV 642
+ T T GK +
Sbjct: 150 IDTLNNTDFRGKRI 163
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 361 VMAAGEHTINNKKVDPKKA 417
HTI+ + V+ K A
Sbjct: 66 ACENPNHTIDGRTVNCKLA 84
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +1
Query: 424 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 603
R KI+V GL + + ++F FG I+ ++ D + KGF F+TF +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 604 LKTPKRTIGGKEVDVKRA 657
+ P TI G+ V+ K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 56.8 bits (131), Expect = 1e-08
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 366
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 367 ---AAGEH--TINN--KKVDPKKAKAR------------HGKIFVGGLSSEISDDEIRNF 489
A G+ TI K P + + + ++++G L+ + ++ +IR
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281
Query: 490 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 648
FS+ I V + +K + KG+ + F+ V LK ++ I G+ V +
Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKI 333
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K++VGG+ + ++DEIR++F G I++V+ G FITF++E L
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 613 PKRTIGGKEVDVKR 654
+ +G + + +++
Sbjct: 222 DRAAMGDRYLTIQQ 235
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAI 317
Query: 361 VMAAGEHTINNKKV 402
+ + I + V
Sbjct: 318 ALKLDQQVICGRPV 331
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 373 GEHTINNKKVD 405
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/71 (30%), Positives = 46/71 (64%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE- 65
Query: 613 PKRTIGGKEVD 645
+ GKE+D
Sbjct: 66 ---EMNGKELD 73
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 373 GEHTINNKKVD 405
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/71 (30%), Positives = 46/71 (64%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE- 65
Query: 613 PKRTIGGKEVD 645
+ GKE+D
Sbjct: 66 ---EMNGKELD 73
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 373 GEHTINNKKVD 405
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/71 (30%), Positives = 46/71 (64%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE- 65
Query: 613 PKRTIGGKEVD 645
+ GKE+D
Sbjct: 66 ---EMNGKELD 73
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 376 EHT-INNKKVD----------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 522
H+ + K + ++ + ++V L S I+ + F FG+IL +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 523 MPFDKTKNQRKGFCFITFESEQ 588
+ + Q KGF F+ F++EQ
Sbjct: 143 VV--EENGQSKGFGFVQFDTEQ 162
Score = 48.4 bits (110), Expect = 4e-06
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Frame = +1
Query: 145 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 324
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 325 FIVFKAPESIDKVMAA--GEHTINNK-------KVDPK--------------KAKARHGK 435
F+ F PE+ K M + G + K K D + K R
Sbjct: 246 FVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSN 305
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
++V LS +++ +R F +G I+ ++ + + KGF F+ F + + K
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSN----CEESKQA 360
Query: 616 KRTIGGKEVDVK 651
KR + G VD K
Sbjct: 361 KRYLNGFLVDGK 372
Score = 41.1 bits (92), Expect = 6e-04
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 372
L+V L T L F +G I S V + G+S+GF F+ F +S +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 373 ------GEHTINNKKVDPKKAKARHGK-----IFVGGLSSEISDDEIRNFFSEFGTILEV 519
G+ K ++ + A G ++V L ++DD + FS++GT+ V
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 520 EMPFDKTKNQRKGFCFITF 576
+ D R GF F+ F
Sbjct: 232 VVMRDGMGRSR-GFGFVNF 249
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = +1
Query: 346 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 525
E +++ GE + +K +A G+++VG L I+ E+ F E GT+++V++
Sbjct: 89 EEVEEEGDEGEEEVEEEK-QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 147
Query: 526 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDV 648
+DK ++ +GF F+T S E+ + IGG+ V V
Sbjct: 148 VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 55.2 bits (127), Expect = 4e-08
Identities = 44/204 (21%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Frame = +1
Query: 73 NDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 249
+D + + ++ + G + ++ + +A G ++ +L+VG L + T EL
Sbjct: 78 DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG--EEGRLYVGNLPYTITSSELSQI 135
Query: 250 FGAYGEIESINVKTDPNTGRSRGFAFI----VFKAPESID-----------------KVM 366
FG G + + + D T RSRGF F+ + +A E++ +V
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 195
Query: 367 AAGEHTINNKKV-DPKKAKA-RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKT 540
GE+ + K+ D ++ K++ G L ++ +++ F + +L ++ +++
Sbjct: 196 RGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERN 255
Query: 541 KNQRKGFCFITFESEQVVNDLLKT 612
+ +GF FI+FES + V L T
Sbjct: 256 TGRSRGFGFISFESAENVQSALAT 279
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 56.0 bits (129), Expect = 2e-08
Identities = 41/194 (21%), Positives = 91/194 (46%), Gaps = 22/194 (11%)
Frame = +1
Query: 142 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 321
++++ +A P + R++++G + T+++L +G +E + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 322 AFIVFKAPESIDKVM-AAGEHTINNKKV-------------DPKKAKARHG-------KI 438
F K+ E + V+ +T+ +++ D ++ K+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKV 179
Query: 439 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKTP 615
+VG L+ ++ + + N FSE G ++ ++ ++ GF F+TF SE+ V ++
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
Query: 616 KRTIGGKEVDVKRA 657
+ G+++ V +A
Sbjct: 240 NSLLEGQKIRVNKA 253
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+F+GG++ + +D +R F+++G +++ + D+ + +GF F+TF S + + ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 613 -PKRTIGGKEVDVKRA 657
R + G+ V V A
Sbjct: 101 LDGRDLHGRVVKVNYA 116
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 373 GEHTINNKKVDPKKA 417
TI + + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF+ + K
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 613 PKRTIGGKEVDVKRA 657
P TI G+ + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 373 GEHTINNKKVD 405
IN ++ +
Sbjct: 78 STPIINGRRAN 88
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVGGL+ + + + + F ++G ILE + DK + KG+ F+TF+ + +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 613 PKRTIGGKEVDVKRA 657
I G+ + A
Sbjct: 78 STPIINGRRANCNLA 92
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 55.2 bits (127), Expect = 4e-08
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Frame = +1
Query: 142 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 321
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 322 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 501
AF+ F E + + + + N K A + +FVG + + + +R +
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHY 317
Query: 502 G--TILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 609
G + ++ + D N +G+ F+ F S D K
Sbjct: 318 GVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHK 356
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+ +F+ GL ++ +RD YG++E + + + + R + F F+ F E+ V
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSC 448
Query: 370 AGEHTINNKKVDPKKAKAR 426
A INN ++ + KA+
Sbjct: 449 A--KFINNSELGEGEDKAK 465
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/48 (29%), Positives = 32/48 (66%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
++FV GLS +++++++ F+ FG +++ + D+ + KGF F+T+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 354
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/71 (32%), Positives = 40/71 (56%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ FVGGL+ + I F+EFG + + ++ D+ + KGF F+TF+ E D ++T
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE----DSMRT 100
Query: 613 PKRTIGGKEVD 645
+ G+E+D
Sbjct: 101 AIDRMNGQELD 111
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/91 (27%), Positives = 47/91 (51%)
Frame = +1
Query: 316 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 495
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 496 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+FG ++ + M DK N+ KGF F+ +E+E+
Sbjct: 99 QFGNLIHMNMVMDKVANRPKGFAFLRYETEE 129
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-Q 136
Query: 373 GEH--TINNKKVDPKKAKAR 426
G H ++ + + ++AK R
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/67 (29%), Positives = 43/67 (64%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 613 PKRTIGG 633
+ GG
Sbjct: 67 MNGSGGG 73
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 54.0 bits (124), Expect = 8e-08
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDD-GSFKGYGHIEFASPEEAQKALE 442
Query: 370 AGEHTI---------NNKKVDPKKAK-ARHGK------IFVGGLSSEISDDEI----RNF 489
+ N++ P+ + R G+ I+V G SS + +DEI R+
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 490 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 657
FS+ G + V +P D+ +GF +I S ++ L+ IGG + V+ +
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEES 556
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 130 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIESINVKTDP 297
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 298 NTGRSRGFAFI 330
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +1
Query: 337 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 516
K ++ V A + K + + +F G LS +I+ +I NFF E G +++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Query: 517 VEM-PFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 642
V + FD KG+ I F S + L+ + + G++V
Sbjct: 413 VRLSSFD--DGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDV 453
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+ S + +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 373 GEHTINNKKVDPKKAKA 423
+ I+ + + A A
Sbjct: 73 SKPIIDGRTTNCNLASA 89
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
KIFVG L+ + D++R +F +FG +++ + + + KG+ FITF L+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 613 PKRTIGGKEVDVKRA 657
K I G+ + A
Sbjct: 73 SKPIIDGRTTNCNLA 87
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +1
Query: 157 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 337 KAPESIDKVMAAGEHTINNKKV 402
K+ ++ + + +H++ +V
Sbjct: 94 KSVGDANRCIRSLDHSVLQGRV 115
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 616 KRTI-GGKEVDVKR 654
++ G+ + V++
Sbjct: 107 DHSVLQGRVITVEK 120
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 53.2 bits (122), Expect = 1e-07
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Frame = +1
Query: 148 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 327
+D EA D R +F ++ T++++ + F G++ + + D + RSRG +
Sbjct: 168 EDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGY 227
Query: 328 IVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------------KI 438
+ F S+ +A + + V K ++A ++
Sbjct: 228 VEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRL 287
Query: 439 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTP 615
+VG L +S+D++R F FG++ V++P D+T KGF F+ F E N L
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFVQFARLEDARNALNLNG 346
Query: 616 KRTIGGKEVDV 648
+ I G+ + V
Sbjct: 347 QLEIAGRAIKV 357
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +1
Query: 118 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 279
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 280 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 426
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 279 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +1
Query: 82 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 261
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 262 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 613 PK-RTIGGKEVDVKRA 657
+ G+++ V A
Sbjct: 310 LNGADLDGRQIRVSEA 325
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +1
Query: 118 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 279
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 280 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 426
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +1
Query: 82 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 261
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 262 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 613 PK-RTIGGKEVDVKRA 657
+ G+++ V A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 361 VMA 369
++
Sbjct: 269 ALS 271
Score = 49.2 bits (112), Expect = 2e-06
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Frame = +1
Query: 235 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH---- 381
+L D F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 382 --------TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEV 519
T N +V PKK +++H K++VG L D +RN FS+FGTI+
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 520 EMPFDKTKNQRKGFCFITFES 582
+ D+ + + F F++F S
Sbjct: 242 RVLHDRKTGRNRVFAFLSFTS 262
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +1
Query: 142 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 321
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 322 AFIVFKAPES 351
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/88 (27%), Positives = 44/88 (50%)
Frame = +1
Query: 346 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 525
ES++K + + D + + K+F+ GLS S+ +R F FG ++EV++
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 313
Query: 526 PFDKTKNQRKGFCFITFESEQVVNDLLK 609
DK + KG+ F+ + +E+ LK
Sbjct: 314 IMDKISKRSKGYAFLEYTTEEAAGTALK 341
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 52.4 bits (120), Expect = 3e-07
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 315
G + +SAE R+ D ++VGGL + +++ L + F G + ++ V D T +
Sbjct: 10 GANLLGQHSAE---RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 316 GFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDD 474
+ FI +++ E D KV+ G+ NK KK+ +F+G L ++ +
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
Query: 475 EIRNFFSEFGTIL-EVEMPFDKTKNQRKGFCFITFES 582
+ + FS FG I ++ D +GF FI+++S
Sbjct: 127 LLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 160 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVF 336
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 337 KAPESIDKVMAA--GEHTINNK 396
+ E+ D + + G++ N +
Sbjct: 162 DSFEASDAAIESMTGQYLSNRQ 183
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +1
Query: 109 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 279
++ AE G SQD + SA D R ++VG + + T +E++ HF + G + +
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 280 NVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 402
+ TD G+ +GFA++ F E++ + E ++ +++
Sbjct: 133 TILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 172
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +1
Query: 409 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+K + I+VG + + +E++ F GT+ V + DK Q KGF ++ F +
Sbjct: 96 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVE 154
Query: 589 VVNDLLKTPKRTIGGKEVDV 648
V + L + + G+++ V
Sbjct: 155 AVQNSLILNESELHGRQIKV 174
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 52.0 bits (119), Expect = 3e-07
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Frame = +1
Query: 163 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 340 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG----------------KIFVGGLS 456
E DKV+ ++ +NKK P + K G K+FVG L
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLP 117
Query: 457 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+S+ E+++ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 118 KNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 160
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 613 --PKRTIGG 633
K+T+ G
Sbjct: 73 FHNKKTLPG 81
Score = 34.7 bits (76), Expect = 0.055
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 397
Query: 376 EHTINNKKVDPKKAKAR 426
+T+N ++ KK K +
Sbjct: 398 -NTMNGCQLSGKKLKVQ 413
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 367 AA--GEHTINNKKV 402
A G H + V
Sbjct: 167 EALNGRHIMEGANV 180
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Frame = +1
Query: 172 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 342
PG D R ++VG + + T+ L++ F + G +ES ++ D + S GF +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRR 107
Query: 343 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 501
++ + G H KV+ ++ + H IFVG LS E++D + FS F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVF 167
Query: 502 GTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+ + + +D+ + +GF F++F ++Q
Sbjct: 168 SSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 157 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 324
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 325 FIVFK 339
F+ F+
Sbjct: 189 FVSFR 193
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +1
Query: 157 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 337 KAPESIDKVMAA 372
+ P D AA
Sbjct: 424 QDPSVTDIACAA 435
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+IFVGGL ++ +IR FG + + D+ KG+ F ++ V +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 613 PKR-TIGGKEVDVKRA 657
+G K + V+RA
Sbjct: 436 LNGIKMGDKTLTVRRA 451
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.2 bits (117), Expect = 6e-07
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Frame = +1
Query: 178 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 349 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 453
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 454 SSEISDDEIRNFFSEFGTILEVEMPFDK 537
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Frame = +1
Query: 160 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 340 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 477
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 478 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 591
+ F + + ++ ++ D+ + KG+ F+ F ESEQ+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 133 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 306
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.2 bits (117), Expect = 6e-07
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Frame = +1
Query: 178 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 349 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 453
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 454 SSEISDDEIRNFFSEFGTILEVEMPFDK 537
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Frame = +1
Query: 160 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 340 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 477
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 478 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 591
+ F + + ++ ++ D+ + KG+ F+ F ESEQ+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 133 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 306
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 50.4 bits (115), Expect = 1e-06
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Frame = +1
Query: 148 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 327
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 328 IVFKAPESIDKVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEI 465
+ F + + ++V+ ++ P +K +G +FVG LS ++
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 466 SDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 585
+D + FS+ + ++ ++ D + KG+ F+ F E
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 349 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 522
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG ++ V+
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 523 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 636
+P KG F+ F + D +++ T+ GK
Sbjct: 352 IPVG------KGCGFVQFADRKSAEDAIESLNGTVIGK 383
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 130 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 306
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Frame = +1
Query: 172 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 342
PG D R ++ G + + T+ L++ F + G IES ++ D + S GF +
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS---SYGFVHYFDRR 111
Query: 343 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 501
S+ + G H KV+ ++ + H IFVG LS E++D + + FS F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF 171
Query: 502 GTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+ + + +D+ + +GF F++F ++Q
Sbjct: 172 NSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 306
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 307 RSRGFAFIVFK 339
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 50.0 bits (114), Expect = 1e-06
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 372
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+ A ++ V +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 373 GEHTINNK---------------------KVDPKKA--KARHGKIFVGGLSSEISDDEIR 483
H ++K + + K+A K + ++V L ISD++++
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 484 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 651
FS FGT+ ++ D KG F+ F + + + + + GK ++ K
Sbjct: 150 EIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS----QLSGKMIESK 200
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +1
Query: 151 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 330
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 331 VFKAPESIDKVMA 369
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +1
Query: 355 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 534
DK + G + ++ D K + ++V L+ +DD+++N F E+G I + D
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 63
Query: 535 KTKNQRKGFCFITFES 582
+ + KGF F+ FE+
Sbjct: 64 -GEGKSKGFGFVNFEN 78
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/77 (38%), Positives = 40/77 (51%)
Frame = +1
Query: 415 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 594
AK ++FV LS+ +D +R FS FG I E + D + KGF FITF+SE
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 595 NDLLKTPKRTIGGKEVD 645
LK ++ GK VD
Sbjct: 62 RKALK----SLDGKIVD 74
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
+LFV LS TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 361 VM 366
+
Sbjct: 234 AL 235
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-------S 351
KL+ G L + L + E + V + +TG+SRGFAF+ E +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 352 IDKVMAAGEHTINNKKVDPKKAK-----ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 516
+D G N PK K K+FVG LS ++ + + F E G ++
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 517 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+ FD + +G+ F+ + S+ + L++
Sbjct: 206 ARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
K+++GGLS + +++ FS F + E + +K + +G+ F+ F SE N +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 373 GEHTINNKKVD 405
+ NK++D
Sbjct: 97 ----MQNKELD 103
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
KIFVGGLS + ++ F FG I++ + D+ +GF F+T++S +V N+ ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 613 -PKRTIGGKEVDVKRA 657
+ + G+ + V A
Sbjct: 97 MQNKELDGRIIGVHPA 112
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Frame = +1
Query: 172 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 345
PG D R ++VG + + T+ L++ F G +ES + + S GF +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRS 103
Query: 346 ESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 504
+ + G H KV+ ++ + H IFVG LS E++D + FS +
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYP 163
Query: 505 TILEVEMPFDKTKNQRKGFCFITFESEQ 588
T + + +D+ + +GF F++F ++Q
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 157 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 324
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 325 FIVFK 339
F+ F+
Sbjct: 184 FVSFR 188
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 369
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +M
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 370 AGEHTINNKKVDPKKAKAR 426
+N + + AKA+
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLK 609
K+F+GGLS ++ + FS+ G ++E ++ D+ ++ KGF F+TF S ++ L++
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 610 TPKRTIGGKEVDVKRA 657
+ + G+ + V A
Sbjct: 95 FNGQQLNGRTIFVDYA 110
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 351
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/51 (29%), Positives = 34/51 (66%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
++VGG+ ++++ ++ FS++G I++V + DK + KGF F+ +E ++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 363
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 364 MA 369
MA
Sbjct: 175 MA 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 361 V--------MAAGEHTI--------NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 492
M E T + +KVD A H IFVG L+ +++D ++ F
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD---AGPDH-SIFVGDLAPDVTDYLLQETF 136
Query: 493 S-EFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 597
+ ++ ++ D + + KG+ F+ F E N
Sbjct: 137 RVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERN 172
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 48.4 bits (110), Expect = 4e-06
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Frame = +1
Query: 172 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 351
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 352 IDKVMAAGEHTINNKKV-----------------DPKKAKARHG-------KIFVGGLSS 459
K + + +++ P+ R G KIFV G +
Sbjct: 351 AQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDA 410
Query: 460 EISDDEIRN----FFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
+S+D+I+N FS G I V +P D+ KG ++ F
Sbjct: 411 SLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +1
Query: 346 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEIRNFFSEFGTILEVE 522
+S D M E + + P A K +F LS I ++ NFF E G +++V
Sbjct: 268 KSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVR 327
Query: 523 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 642
++ +GF + F S + L+ R + G+E+
Sbjct: 328 FSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREI 367
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Frame = +1
Query: 184 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 357
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 358 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 495
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 496 E-FGTILEVEMPFDKTKNQRKGFCFITFESE 585
E + ++ ++ D + KG+ F+ F E
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 363
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 364 M 366
M
Sbjct: 256 M 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Frame = +1
Query: 184 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 357
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 358 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 495
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 496 E-FGTILEVEMPFDKTKNQRKGFCFITFESE 585
E + ++ ++ D + KG+ F+ F E
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 47.6 bits (108), Expect = 7e-06
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSR--GF-----------A 324
D +FVG LS + +D L + F Y +++ V D NTGRS+ GF A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 325 FIVFKAPESIDKVMAAGEHT-------------INNKKVDPKKAKARHGKIFVGGLSSEI 465
+ + M G T + N + + + IFVGGL S +
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 466 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKE 639
+D++++ F+EFG I+ V++P KG F+ F + + L+ T+ GK+
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGKQ 367
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIES 276
T + NG + GG + + P D + +FVGGL TD++L+ F +GEI S
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS 332
Query: 277 INVKTDPNTGRSRGFAFIVFK--APESIDKV 363
+ + G+ GF V + A E+++K+
Sbjct: 333 VKIP----VGKGCGFVQFVNRPNAEEALEKL 359
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 48.0 bits (109), Expect = 5e-06
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Frame = +1
Query: 151 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAF 327
+ AE P + +FVG L+ + TD L + F A Y ++ V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 328 IVFKAPESIDKVMAA--GEHTIN---------NKK---VDPKKAKARHGK---------- 435
+ F + M G++ + NKK + P + G
Sbjct: 220 VRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT 279
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 537
IFVG + +++D++++ F +FG ++ V++P K
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Score = 46.4 bits (105), Expect = 2e-05
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Frame = +1
Query: 133 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRS 312
GGG SQ+ SA + R L++G L + L + FG GE + V + G S
Sbjct: 66 GGGGSQNPGSA-----GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYS 120
Query: 313 RGFAFIVFKAPESIDK--------VMAAGEHT--INNKKV---DPKKAKARHGKIFVGGL 453
G+ FI F + ++ M + E +N ++ + ++A+ +FVG L
Sbjct: 121 EGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDL 180
Query: 454 SSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 591
+ +++D + F + ++ ++ D+T + KG+ F+ F ESEQ+
Sbjct: 181 APDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQI 229
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 306
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 372
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + + + ++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 373 GE-HTINNKKVDPK 411
+ +N ++V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 609
+++VG LS +DD +R FS +G +++ + D+ ++ +GF F+T+ S +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 610 TPKRTIGGKEVDVK 651
+ + G+ V VK
Sbjct: 64 MDGKELNGRRVSVK 77
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 48.0 bits (109), Expect = 5e-06
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI------- 354
++V L TD +L+ FG +GEI S V D G+SR F F+ F+ E+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 355 ------DKVMAAGEHTINNKKVDPKKAK-----------ARHG-KIFVGGLSSEISDDEI 480
+K + G + + KAK R G ++V L + + ++
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 481 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPKRTIGGKEVDVKRA 657
FSEFGTI ++ + KG F+ F SE+ +LK + +G K + V A
Sbjct: 240 EELFSEFGTITSCKV-MVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 403 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
DP + G +FV L I + ++ + FS FG +L ++ D KG+ F+ F S
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYS 80
Query: 583 E 585
+
Sbjct: 81 D 81
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +1
Query: 172 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 351
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 352 IDKVMA 369
K +A
Sbjct: 110 SAKGIA 115
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
+FV GLS + + +R F++FG + + ++ D+ KGF F+ +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +1
Query: 109 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 276
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 277 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 414
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/99 (22%), Positives = 46/99 (46%)
Frame = +1
Query: 352 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 531
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 532 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 648
DK Q KGF ++ F + V + L+ + + G+++ V
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +1
Query: 109 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 276
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 277 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 414
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/99 (22%), Positives = 46/99 (46%)
Frame = +1
Query: 352 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 531
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 532 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 648
DK Q KGF ++ F + V + L+ + + G+++ V
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 47.6 bits (108), Expect = 7e-06
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Frame = +1
Query: 160 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 337 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 486
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 229 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 288
Query: 487 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGK 636
F +G I E+ +T N R+ FI + + LK R+ IGGK
Sbjct: 289 LFGAYGEIREIR----ETPN-RRFHRFIEYYDVRDAETALKALNRSEIGGK 334
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 47.6 bits (108), Expect = 7e-06
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Frame = +1
Query: 160 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 337 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 486
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 242 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 301
Query: 487 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGK 636
F +G I E+ +T N R+ FI + + LK R+ IGGK
Sbjct: 302 LFGAYGEIREIR----ETPN-RRFHRFIEYYDVRDAETALKALNRSEIGGK 347
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 612
+FV G+S +++ + FS++G +L+V++ DK + + KGF ++TF S E+ LL+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 613 PKRTIGGKEV 642
+ + G+ V
Sbjct: 83 NAQLVDGRVV 92
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +1
Query: 184 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 363
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 364 MAAGEHTINNKKV 402
+ E ++ +++
Sbjct: 149 LQLNESELHGRQL 161
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 352 IDKVMAAGEH-TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 528
++K M A + +I + ++ AR +FVG + + +E++ F GT+ V +
Sbjct: 67 VEKEMGAQDPASIAANQAGKEEVDAR--SVFVGNVDYACTPEEVQQHFQTCGTVHRVTIL 124
Query: 529 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 648
DK Q KGF ++ F + V + L+ + + G+++ V
Sbjct: 125 TDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 163
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 47.2 bits (107), Expect = 1e-05
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRK-LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 315
G Q ++ PG D K L++G L + + F GE S V + TG+S
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 316 GFAFIVFKAPESIDKV--------MAAGEHTINNKKVDPKKAKARHGK------IFVGGL 453
G+ FI F + ++V M + E T + R IFVG L
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 454 SSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 585
+ E++D + + F +G++ ++ D+T + KG+ F+ F E
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMP 528
IFVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 148 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 324
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 325 FIVFKA 342
KA
Sbjct: 301 QYANKA 306
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 318
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 319 FAFIVFKAPESIDK 360
FAF+ + + ++
Sbjct: 115 FAFVTMSSLKDAER 128
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 47.2 bits (107), Expect = 1e-05
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Frame = +1
Query: 133 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 306
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 307 RSRGFAFIVFKAPESIDKVMAA--GEHTINNKKVDPK-----KAKARHG----------K 435
+ FI +K E + +AA + T + + K + R G K
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPK 208
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
++V L+ + + E+ FS +G I ++ M D K R G+ F+ F +++ +K
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR-GYAFVQFSCKEMALAAIK 265
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +1
Query: 88 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 249
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 250 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 429
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 430 GK 435
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +1
Query: 88 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 249
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 250 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 429
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 430 GK 435
GK
Sbjct: 731 GK 732
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 46.8 bits (106), Expect = 1e-05
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 24/193 (12%)
Frame = +1
Query: 145 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 324
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 325 FIVF----KAPESIDKV--------MAAGEHTINNKKVDPKK---------AKARHGKIF 441
F+ +A +IDK + + KK PK RH K++
Sbjct: 139 FVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRH-KLY 197
Query: 442 VGGLSSEISDDEIRNFF--SEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 612
V L+ + +R F ++F + + F + + G+ F++F + E+ N + K
Sbjct: 198 VSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAITKL 256
Query: 613 PKRTIGGKEVDVK 651
+ I G+ + +K
Sbjct: 257 NGKEIMGRPITLK 269
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +1
Query: 355 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 534
+K +A E T +K + + K+FV L +S ++I F + GT+ VE+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 535 KTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRA 657
K + +GF F+T S E+ + K + G+ + V A
Sbjct: 130 K-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/99 (29%), Positives = 50/99 (50%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 318
G + + + E+P R L+VGGL+ ++++RD F A+GEIESI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 319 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 435
AF+ + E +K A E N V+ ++ K G+
Sbjct: 265 CAFVTYTTREGAEK---AAEELSNRLVVNGQRLKLTWGR 300
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/99 (27%), Positives = 52/99 (52%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 318
G + + + E+P + + L+VGGL+ ++++RD F A+GEIESI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 319 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 435
AF+ + + E +K A + N ++ ++ K G+
Sbjct: 265 CAFVTYTSREGAEK---AAQELSNRLVINGQRLKLTWGR 300
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +1
Query: 172 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 336
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 337 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 438
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +1
Query: 172 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 336
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 337 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 438
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +1
Query: 166 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK- 339
E DD +R LF+ L ++ T +E++ F +GE+ES+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 340 APESIDKVMAA 372
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +1
Query: 394 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 573
+K +K+ + V GL I++ ++ FSE G + + +K ++ +GF F+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 574 FESEQVVNDLLKTPK-RTIGGKEVDVKRA 657
F ++ VN ++ T+GG+ + VK+A
Sbjct: 68 FALQEDVNRAIELKNGSTVGGRRITVKQA 96
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 315
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 316 GFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 426
GFAF+ F E +++ + T+ +++ K+A R
Sbjct: 62 GFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 45.6 bits (103), Expect = 3e-05
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 363
D +FVG L+ + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 364 MA---AGEHTINNKKVDPKKAKARHGKIFVGG-----------------------LSSEI 465
M + + ++ P + +G GG L S +
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 466 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKE 639
+D++++ FSEFG I+ V++P KG F+ F + + L+ T+ GK+
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGKQ 369
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 279
T + NG + GG + G + +FVGGL TD++L+ F +GEI S+
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
Query: 280 NVKTDPNTGRSRGFAFIVFK--APESIDKV 363
+ G+ GF V + A E+++K+
Sbjct: 336 KIP----VGKGCGFVQFVNRPNAEEALEKL 361
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/61 (32%), Positives = 39/61 (63%)
Frame = +1
Query: 154 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 333
+N A G D + LFV L++E+++ +++ F +YG I+ +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 334 F 336
+
Sbjct: 186 Y 186
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +1
Query: 403 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
DP + +FV L+ E S+ +I+ F +G I V + D+ N+ KG+ FI
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFI---- 184
Query: 583 EQVVNDLLKTPKRTIGGKEVDVKR 654
E + +K + G+++D +R
Sbjct: 185 EYMHTRDMKAAYKQADGQKIDGRR 208
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.8 bits (101), Expect = 5e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESI----NVKTD 294
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 295 PNTGRSRGFAFIVFK 339
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +1
Query: 175 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 354
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 355 DKVMAA 372
D AA
Sbjct: 414 DIACAA 419
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACA 418
Query: 613 PKRTI--GGKEVDVKRA 657
I G K + V+RA
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Frame = +1
Query: 424 RHGK-IFVGGLSSEISDDEIRNFFSEFGTIL--EVEMPFDKTK----NQRKGFCFITFES 582
RH + ++VGGLS ++ + FFS+ + P D N K F F+ S
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 583 EQVVNDLLKTPKRTIGGKEVDVKR 654
+ ++ + G V V+R
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRR 319
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +1
Query: 175 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 354
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 355 DKVMAA 372
D AA
Sbjct: 414 DIACAA 419
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACA 418
Query: 613 PKRTI--GGKEVDVKRA 657
I G K + V+RA
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Frame = +1
Query: 424 RHGK-IFVGGLSSEISDDEIRNFFSEFGTIL--EVEMPFDKTK----NQRKGFCFITFES 582
RH + ++VGGLS ++ + FFS+ + P D N K F F+ S
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 583 EQVVNDLLKTPKRTIGGKEVDVKR 654
+ ++ + G V V+R
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRR 319
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +1
Query: 175 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 354
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 355 DKVMAA 372
D AA
Sbjct: 414 DIACAA 419
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACA 418
Query: 613 PKRTI--GGKEVDVKRA 657
I G K + V+RA
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Frame = +1
Query: 424 RHGK-IFVGGLSSEISDDEIRNFFSEFGTIL--EVEMPFDKTK----NQRKGFCFITFES 582
RH + ++VGGLS ++ + FFS+ + P D N K F F+ S
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 583 EQVVNDLLKTPKRTIGGKEVDVKR 654
+ ++ + G V V+R
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRR 319
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 199 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 366
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = +1
Query: 439 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
FV GL + + ++ + FS+FG +++ ++ +D+ + + F F+TFE E+ + D +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 351
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+FVG + + +++++R E G ++ + D+ + KG+ F ++ E+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
LFVG LS TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 376 EHTI 387
H++
Sbjct: 126 HHSL 129
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +1
Query: 145 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 306
S+D S + GR ++ + V G+ ET ++++ + FG +GEI+++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 307 RSRGFAFIVFKAPESIDKVMAA 372
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
I V G+ E +++I N F +FG I + + D+ KG+ I +E ++
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/89 (28%), Positives = 46/89 (51%)
Frame = +1
Query: 370 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 549
AG H N D ++ + IFVGGL ++++++++ FS+FG ++ V++P
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG----- 361
Query: 550 RKGFCFITFESEQVVNDLLKTPKRTIGGK 636
KG F+ F + Q + + T+ GK
Sbjct: 362 -KGCGFVQFANRQSAEEAIGNLNGTVIGK 389
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 336
D +FVG L+ + +D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/96 (22%), Positives = 43/96 (44%)
Frame = +1
Query: 109 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 288
Q NG+ N + + G ++ +FVGGL + T+++L F +GE+ S+ +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 289 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 396
+G F+ F +S ++ + T+ K
Sbjct: 360 V------GKGCGFVQFANRQSAEEAIGNLNGTVIGK 389
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 42.3 bits (95), Expect = 3e-04
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 40/200 (20%)
Frame = +1
Query: 175 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIESINVKTDP--------------- 297
G DD+ KL FVG L + K + F +GE+ES+ +++ P
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 298 --NTGRSRGFAFIVFKAPESIDKVMA------AGEHTINNKKVDPKKAKARHG------- 432
N S A++VF+ +S +A G H ++ P+K + H
Sbjct: 222 QINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDP 281
Query: 433 --KIFVGGLSSEISDDEIRNFF---SEFGTILE-VEMPFDKTKNQRKGFCFITFESEQVV 594
+F+G L ++ D+E+ F S +E V + D N KG ++ F++ +
Sbjct: 282 KRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAA 341
Query: 595 NDLLKTPKRTIGGKEVDVKR 654
N +LK + +E+ + R
Sbjct: 342 NLVLKKGYLKLRERELRISR 361
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
D R +F+G L ++ D+E+ F IE++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 349 SIDKVMAAGEHTINNKKVDPKKAK 420
+ + V+ G + +++ + K
Sbjct: 340 AANLVLKKGYLKLRERELRISRVK 363
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 427 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
HG + V + + +E+R F FG + +V +P D Q +GF F+ F +
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQ 105
Query: 607 KT-PKRTIGGKEVDV 648
++ +R+ G+E+ V
Sbjct: 106 RSMNRRSFAGREITV 120
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +1
Query: 145 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 324
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 325 FIVFKAPESIDKVMAAGEH 381
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L V GL + ++ LR F + I+ + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 376 EHTI---NNKKVDPKKAKARHG 432
T N K + AK+ HG
Sbjct: 520 NRTALERNGKILRVAYAKSVHG 541
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
+ V GLS + +++++ +E+G + V + ++ +GF FI F + ++
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMM 356
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
IFV + + D + F++FG +L+ + D Q G +I F ++ + L
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 178 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 358 KVM 366
+ +
Sbjct: 269 RAI 271
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 442 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
V LS + + ++ F FG + V + D+ +GF F+ F S +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRE 265
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L+VG L+ ETT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 376 E 378
E
Sbjct: 71 E 71
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTI 510
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
+++G +S +++++ FS G I ++ M DK GFCF+ F S + D +K
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 616 KRTI 627
TI
Sbjct: 96 SGTI 99
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
+++G +S+ TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 166 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 294
E P + + L+VGGL+ ++++ DHF AYGE+ESI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
+++G + +SD + + + G ++++ +P DK ++ KGF F +E+E++ + +K
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVK 66
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
++VGGL+ E+++ + F FG I +V+ P D+ + + F F+TF
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
L+VGGL+ E + L F +G+I+ + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 41.5 bits (93), Expect = 5e-04
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 12/189 (6%)
Frame = +1
Query: 121 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 297
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 298 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 447
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 448 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR-T 624
L IS+D++ F G I E+ +T ++R F+ F + LK R
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEIR----ETPHKRH-HKFVEFYDVRGAEAALKALNRCE 313
Query: 625 IGGKEVDVK 651
I GK + V+
Sbjct: 314 IAGKRIKVE 322
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 41.5 bits (93), Expect = 5e-04
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 12/189 (6%)
Frame = +1
Query: 121 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 297
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 298 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 447
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 448 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR-T 624
L IS+D++ F G I E+ +T ++R F+ F + LK R
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEIR----ETPHKRH-HKFVEFYDVRGAEAALKALNRCE 313
Query: 625 IGGKEVDVK 651
I GK + V+
Sbjct: 314 IAGKRIKVE 322
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 345
LFVG L W TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
+FVG L +D E+ ++G + EV+ +K + KG+C + F
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 40.7 bits (91), Expect = 8e-04
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 14/176 (7%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 315
GG ++ P ++ L++G + + E+ F +G ++ + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 316 GFAFIVFKAPESIDKVMAAG--------EHTINNKKVDPKKAKARHGKIF------VGGL 453
F FI F+ PE + +AAG EH + ++P+ K + F V +
Sbjct: 102 HFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSV 159
Query: 454 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 621
E E +L+ + D+ + +R I +E ++V + PKR
Sbjct: 160 QIERRQLNKERTLEEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKR 215
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 360
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADD 62
Query: 361 VMAAGE-HTINNKKVDPKKAKARHGKIFVG 447
+ + +I + V R G++ G
Sbjct: 63 AIEDMDGKSIGGRAVRVNDVTTRGGRMNPG 92
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 585
KI V L S+D ++ FS FG I EV++ D+ + KG+ FI F S+
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQ 91
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 315
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 316 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 426
G+ F+ F P +AA +N K V + K R
Sbjct: 179 GYGFVSFLNPAD----LAAALKEMNGKYVGNRPIKLR 211
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
++F G L +E++DD + F+ F T ++ DK + KG+ F++F + + LK
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 613 PK-RTIGGKEVDVKRA 657
+ +G + + ++++
Sbjct: 198 MNGKYVGNRPIKLRKS 213
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 318
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 319 FAFIVFKAPESIDKVM 366
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 391 NKKVDPKKAKARHGK--IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 564
++K ++RH + + V LS + ++ F FG + + D+ + +GF
Sbjct: 159 DRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFG 218
Query: 565 FITFESEQ 588
F++F S +
Sbjct: 219 FVSFVSRE 226
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 376 EHTINN 393
+ I N
Sbjct: 119 DAKILN 124
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
LFVG L W TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
+FVG L +D EI + S++G + E++ ++ + KG+C + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 145 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 324
S+DH S+ G L + L + +LRD F +G ++ I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 325 FIVFKAPESIDKVMAAGEHTI 387
F+ ++ E + M H +
Sbjct: 92 FVKYRYAEDAAEAMKRMNHKV 112
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKT 612
+ + L + +++R+ F FG + ++ +P + + +GF F+ + +E + +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 613 PKRTIGGKEVDV 648
+ IGG+E+ +
Sbjct: 109 NHKVIGGREIAI 120
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 145 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 321
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 322 AFIVF 336
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 145 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 321
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 322 AFIVF 336
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 145 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 321
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 322 AFIVF 336
A +V+
Sbjct: 131 AEVVY 135
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +1
Query: 286 KTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----KIFVGG 450
+ +PN +R + KAPES G +++ D + ++ G K+++
Sbjct: 40 RNNPNRKSTRSAPYQSAKAPES-----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 94
Query: 451 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
L + +++I+ F+E G + + FD++ + KG + +
Sbjct: 95 LDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVY 135
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 129
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +1
Query: 367 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 546
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 547 QRKGFCFITFESEQVVN 597
KG+ F+ + Q+ N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
Score = 34.7 bits (76), Expect = 0.055
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 121 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 291
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 292 DPNTGRSRGFAFIVF 336
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +1
Query: 367 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 546
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 547 QRKGFCFITFESEQVVN 597
KG+ F+ + Q+ N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
Score = 34.7 bits (76), Expect = 0.055
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 121 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 291
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 292 DPNTGRSRGFAFIVF 336
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 448 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RT 624
GLS+ +D +R F+ F +++ D+ + KGF FITFESE LK +
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 625 IGGKEVDVKRA 657
+ G+ + V+ A
Sbjct: 132 VNGRLIFVETA 142
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +1
Query: 208 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 387
GLS TTD+ LR F + + +K D T R +GF FI F++ + K + A I
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL----IK-DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 388 NNKKV 402
N ++
Sbjct: 132 VNGRL 136
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 118 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 270
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 118 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 270
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 37.5 bits (83), Expect = 0.008
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Frame = +1
Query: 166 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 345
E P D + V LS T ++ F ++ S+ + + + G+ G+ F+ F +
Sbjct: 150 ETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASA 208
Query: 346 ESIDKVMAA--GEHTINNKKVDPK--------KAKARHGKIFVGGLSSEISDDEIRNFFS 495
+K + GE+ N+K + K + A +FV L I +I NFF
Sbjct: 209 YGANKALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFK 268
Query: 496 EFGTILEVEMPFDKTKNQRKGFCFITFES 582
+ G ++ V + ++ + G+ F+ F S
Sbjct: 269 DVGEVVHVRL-IVNSQGKHAGWGFVEFAS 296
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 145 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 270
S ++++ AP R D ++ V GL + ++L+DH G++
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDV 135
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 403 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK-GFCFITFE 579
+P++ + GKIFVG L + I E FF +FG I V + + ++ GF FI +
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYA 215
Query: 580 SEQ 588
+E+
Sbjct: 216 AEK 218
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 166 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 345
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 346 ESIDKVM 366
+ K +
Sbjct: 295 DETKKAL 301
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 400 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 579
+ K+A R +FV L E I +FF + G ++ V++ K + G F+ F
Sbjct: 117 ISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQL-IVNLKGKLVGCGFVEFA 175
Query: 580 SEQVVNDLLK 609
S + L+
Sbjct: 176 SVNEAEEALQ 185
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
++ LFV L +ET + D F GE+ + + + G+ G F+ F + ++ +
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEAL 184
Query: 367 AA--GEHTINNK 396
GE NNK
Sbjct: 185 QKKNGECLDNNK 196
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 424 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
R +FV LS + I NFF + G ++ V + + T + G F+ F S
Sbjct: 357 RKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHT-GKHVGCAFVEFGS 408
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 270
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 270
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 336
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 270
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 166 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKA 342
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 343 PESIDKVM 366
+ + +
Sbjct: 241 KKQAEAAL 248
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 409 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 34.7 bits (76), Expect = 0.055
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 376 EHTINNKKVDPKKAKA 423
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 409 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 582
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 34.7 bits (76), Expect = 0.055
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 376 EHTINNKKVDPKKAKA 423
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 457 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
S +D+++ N+F FG + +V +P+ Q++ F F+TF + V +L
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTFLHSETVRIIL 373
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +1
Query: 226 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK- 399
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A G H I + +
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 400 -VDPKKAKAR 426
V P K K R
Sbjct: 387 LVKPYKEKGR 396
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 345
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
+++VG L +++ E+ + F FG + V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAIR 56
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 34.7 bits (76), Expect = 0.055
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 276
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 31 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 85
Query: 277 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 384
+ ++ R FAFI ++A E + + A ++
Sbjct: 86 VRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.7 bits (76), Expect = 0.055
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 276
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 72 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 126
Query: 277 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 384
+ ++ R FAFI ++A E + + A ++
Sbjct: 127 VRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.072
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 229 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 405
++++ D+F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 406 PKKAKARHGKI 438
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.072
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 199 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 378
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 379 HTI 387
H +
Sbjct: 299 HDV 301
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 33.9 bits (74), Expect = 0.096
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 555
+FV G S +S+ ++ FSEFG + E F +KN RK
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.096
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 262 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 457 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 606
S D+++ +FS FGT+ +V +P+ Q++ F F++F + V +L
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSFAHPETVKVVL 314
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 229 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 405
D+++ +F +G ++ + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 406 PKKAKARHGKI 438
K K + GK+
Sbjct: 329 VKPYKEK-GKV 338
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
++ VGGL + D++ FS GT+ VE F +TK + F +I F S N L K
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF-SPSSTNSLTK 64
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 214 SWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/87 (24%), Positives = 43/87 (49%)
Frame = +1
Query: 142 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 321
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 322 AFIVFKAPESIDKVMAAGEHTINNKKV 402
AFI F++ +S + M + + +K+
Sbjct: 60 AFIEFESADSAGRAMLHMDGRLIGQKI 86
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +1
Query: 178 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 357
RD+ R LFV GL + +E+ + F + E+ ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 358 KVMAAGEHTINNKKVDPKKAKARH 429
VM H +N D +K H
Sbjct: 88 AVM----HALNGMVFDLEKHSTLH 107
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 454 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ-RKGFCFITFESEQVVNDLLKTPKRTIG 630
S ++ +++ +FFS++G + V MP +++ G + F +E+ +++K
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK-QNLVFA 182
Query: 631 GKEVDVK 651
G+E+++K
Sbjct: 183 GQELELK 189
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 178 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 345
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 346 ESID 357
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 534
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
++VG + ++ FS+FG + V+M + G+ F+ FE E+ D ++
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAEDAIRRT 55
Query: 616 KRTIGG 633
T G
Sbjct: 56 DNTTFG 61
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 223 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 402
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 107 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 155
Query: 403 D 405
D
Sbjct: 156 D 156
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 394 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC--F 567
KK D K + IFV L ++ F +FG I E + ++ C F
Sbjct: 268 KKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGF 327
Query: 568 ITFESEQVVNDLLKTPKRT 624
I+FE+ V +L+ K T
Sbjct: 328 ISFETVASVQSVLQAAKNT 346
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 369
R + VG LS T+ ++++ F GE+ESI+++++ ++ A++ FK + + +
Sbjct: 6 RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVL 59
Query: 370 AGEHTINNKKV 402
+I ++ V
Sbjct: 60 LSGASIADQSV 70
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 609
+++VG L +++ E+ + F FG I V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIR 56
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 588
+FV L+ D+++ FS FGT++ ++ D + FI FE+++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 229 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 405
++++ ++F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 406 PKKAKARHGKI 438
K K + GK+
Sbjct: 328 VKPYKEK-GKV 337
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 178 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 345
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 346 ESID 357
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 534
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 369
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 613 PKRTIG 630
R G
Sbjct: 58 LDRKNG 63
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 369
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 612
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 613 PKRTIG 630
R G
Sbjct: 58 LDRKNG 63
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 373 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 552
GE NN + + + + VG +SS + D E++ F +FG I + T +
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALH-----TACKN 252
Query: 553 KGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVK 651
+GF +++ + N + + G ++D++
Sbjct: 253 RGFIMVSYCDIRAAQNAARALQNKLLRGTKLDIR 286
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 127 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 303
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 304 GRSRGFAFIVFKAPESIDKVMAA 372
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 127 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 303
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 304 GRSRGFAFIVFKAPESIDKVMAA 372
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
R +FVG +ET +L F YG ++ +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIESINVKTDPNTGR 309
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 310 SRGFAFIVFKAPESIDKVMAAGEHT 384
R F+F+ F+ E K + A + +
Sbjct: 127 -RNFSFVQFETQEDATKALEATQRS 150
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
+ V L + +++R F +FG + ++ +P D +GF F+ F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.1 bits (67), Expect = 0.67
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 375
L V L+ ++++L + FG YGEI+ I + PN R F+ F S D + A
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA- 277
Query: 376 EHTINNKKVDPKKAKARHGK 435
+N ++ K+ K H +
Sbjct: 278 ---LNRTEIAGKRIKLEHSR 294
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 576
+ V L + +++R F +FG + ++ +P D +GF FI F
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 31.1 bits (67), Expect = 0.67
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
IFV L + + +++ F FG I + + + + F F+TF S + V +L+
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQAH 338
Query: 616 KRT---IGGKEVDVK 651
K + IG + V ++
Sbjct: 339 KESAIRIGNRRVSIE 353
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 339
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 0.89
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 439 FVGGLSSEISDDEIRNFFSEFGTILEVEMPF 531
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 229 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 366
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 348
R L+VG L ++EL D F +GE+ES+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 433 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 561
KIF+GG S IS + + S FG + + NQR F
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83
>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +1
Query: 349 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 528
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 529 FDKTKNQRKGFCFITFESEQ 588
+++ Q ++TF+ Q
Sbjct: 61 --RSETQESQVAYVTFKDSQ 78
>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
protein
Length = 278
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +1
Query: 349 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 528
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 529 FDKTKNQRKGFCFITFESEQ 588
+++ Q ++TF+ Q
Sbjct: 61 --RSETQESQVAYVTFKDSQ 78
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 615
I+V L + + ++ F FG I + K Q F F+ FE+ L+
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEAS 354
Query: 616 KRTIGGKEVDVK 651
TIG ++ V+
Sbjct: 355 PVTIGDRQAVVE 366
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 377 NTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQM---MKSETSSVNLELS*KWRCPLTKQR 544
NT + + + LK G +E+ K ++ M ++ SSV E++ KWRCP +R
Sbjct: 547 NTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKR 605
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 115 NGNAENGG--GDSQDHNSAEAPGRDDDR 192
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 612
I++G +++ + +D + + G + D T + KGF F FES E ++ +
Sbjct: 206 IYIGKIAT-VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLL 264
Query: 613 PKRTIGGKEV 642
+RTI G+E+
Sbjct: 265 TQRTIDGQEL 274
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 154 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 315
+N A G D + LFV L++E+++ +++ F +YG I+ + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 73 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 192
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 162
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELR----DHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 354
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK--NET 173
Query: 355 DKVMAAGEHTINNKKVD 405
+ G H + +K+D
Sbjct: 174 KGLTLNGSH-LGGRKID 189
>At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 376 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 555
+ T +N +D + + + + +S +S +++ FFS G I VEM +++ Q
Sbjct: 12 DQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQES 68
Query: 556 GFCFITFESEQ 588
++TF+ Q
Sbjct: 69 QVAYVTFKDSQ 79
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.1 bits (62), Expect = 2.7
Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 9/147 (6%)
Frame = +1
Query: 238 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 417
L HF + GEI I V D + +F+ K + DK + + V K
Sbjct: 44 LTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTVIVKPK 103
Query: 418 KARHGKIFVGGLSSEISDDEIRNF---------FSEFGTILEVEMPFDKTKNQRKGFCFI 570
+ +S E D ++ + F G I V +P D + K F+
Sbjct: 104 PKHEPPSPITTISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSVAFL 163
Query: 571 TFESEQVVNDLLKTPKRTIGGKEVDVK 651
E E + L+ + G V VK
Sbjct: 164 RIEGEGAEDKALQLSGTDVVGWTVIVK 190
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 115 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 246
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 412 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 591
K +A+ IFV L + + +++ F FG I + + ++ F+ FE+ +
Sbjct: 269 KPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328
Query: 592 VNDLLKTPKRT---IGGKEVDVK 651
V ++ + + + IG + ++
Sbjct: 329 VKNVFQAHRESPIRIGNRRASIE 351
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 163 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 288
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 163 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 288
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 555
++VG LS ++ ++ + F FG I V++ + +T +++
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKR 220
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 238 LRDHFGAYGEIESINVKTDPNTGRSRGF 321
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 382 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 555
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
Query: 556 GFCFITFESEQVVNDLLKTPKRTIGGK 636
+E+ +V LL+ I G+
Sbjct: 370 -----IYEAWRVYGALLRAAGLCIHGR 391
>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 382 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 555
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
Query: 556 GFCFITFESEQVVNDLLKTPKRTIGGK 636
+E+ +V LL+ I G+
Sbjct: 370 -----IYEAWRVYGALLRAAGLCIHGR 391
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 67 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 198
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 238 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 402
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 478 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 588
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 78 VKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQ 116
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 478 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 588
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 79 VKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQ 117
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 555
++V LSS++ ++ + F FG I V++ + +T+ +++
Sbjct: 189 LYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKR 228
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 202 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 381
V +S TD++L++ F G+I + ++T T R++ A++ FK + + +
Sbjct: 8 VSNVSLGATDRDLKEFFSFSGDI--LYLETQSETERTK-LAYVTFKDLQGAETAVLLSGA 64
Query: 382 TINNKKV 402
TI + V
Sbjct: 65 TIVDSSV 71
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 436 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 579
+F+G L I+++E+R+ S ++++ + +R CFI FE
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKI----LRQERHTVCFIEFE 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.134 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,658,142
Number of Sequences: 28952
Number of extensions: 313528
Number of successful extensions: 1357
Number of sequences better than 10.0: 252
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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